ID A0A0D2SM84_GOSRA Unreviewed; 733 AA.
AC A0A0D2SM84;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=BED-type domain-containing protein {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=B456_007G179100 {ECO:0000313|EMBL:KJB43001.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB43001.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB43001.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM001746; KJB43001.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0D2SM84; -.
DR STRING; 29730.A0A0D2SM84; -.
DR EnsemblPlants; KJB43001; KJB43001; B456_007G179100.
DR Gramene; KJB43001; KJB43001; B456_007G179100.
DR eggNOG; ENOG502RJJK; Eukaryota.
DR OMA; HEEERTM; -.
DR Proteomes; UP000032304; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR InterPro; IPR007021; DUF659.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR PANTHER; PTHR32166:SF74; OS01G0379800 PROTEIN; 1.
DR PANTHER; PTHR32166; OSJNBA0013A04.12 PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF04937; DUF659; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 22..58
FT /note="BED-type"
FT /evidence="ECO:0000259|Pfam:PF02892"
FT DOMAIN 172..299
FT /note="DUF659"
FT /evidence="ECO:0000259|Pfam:PF04937"
FT DOMAIN 442..516
FT /note="HAT C-terminal dimerisation"
FT /evidence="ECO:0000259|Pfam:PF05699"
FT REGION 579..733
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 581..603
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 645..672
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 681..710
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 733
FT /evidence="ECO:0000313|EMBL:KJB43001.1"
SQ SEQUENCE 733 AA; 84001 MW; A4DA05346387642B CRC64;
MPPREEFPTK GLEGAPSNDI GWHFGTSVPN AKGNIVCKLC GKVVKGGITR FKEHIAHKTG
NVAPCPNVTG VIRESMMNLL KEGNTKKVDK KRRKDEFLSQ LREEDDEHEE FVDEVSAIRQ
ATRESIQSQH EWHRREEFRR STASSPWLYN LIQVSTEVGQ DVYLESEYQR VRDWKDLGAT
LMCDGWTNSL NQMHIINFLI YCSKGTIFWK SVDVSSVRSR DAEFYYCLLD SVVEEIGENY
IVQIVTNNEA AMKAAGKNLM LKRKHLYWTS CAAHCLDLCL EDIGKKPSVA KVLDEAKKVT
CFICNHIWTV DLMKKYTQGK QILRPALTRF ATHFIQLEEI TRQKQGLREM FNSKEFKESK
WGQQKSGPAY EAKKIVLGKD FWKKANDLIK VYEPLVKVLR LVDSDEKPTM GFIYEAVDRA
KRAIQQDCRY FTEYEKIIDN RWNFMHSDLL SAAEWWIIYD TCVPELQKLA IKVLSQTTSA
SNCERNWSTF SYIHTKARNR LKYKKLEKLV FTYYNMRLKM RHQKRMSTDD INVSFNPISL
DHIFEDVDPL SKWLHEKVNP LLDGENAGVL PVDSFDDEMD VDQSQQQILS HSSSSSTPSQ
SGDGPDGGGL IPIDEDDGYS GDRGEIRSSS QYGEEYGAGT TGGHFRDRSE FDGNMFPEPR
RDRSEPRAPS KGKGKKHISI GSSSGRRSSS SNLGYSYSST STQGFYPPEQ PSYFQPSHGY
PQPYGYYPPF PNY
//
