ID A0A0D2STC1_GOSRA Unreviewed; 1325 AA.
AC A0A0D2STC1;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=Helicase-like transcription factor CHR28 {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_010G151100 {ECO:0000313|EMBL:KJB66663.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB66663.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB66663.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; CM001749; KJB66663.1; -; Genomic_DNA.
DR RefSeq; XP_012449724.1; XM_012594270.1.
DR STRING; 29730.A0A0D2STC1; -.
DR EnsemblPlants; KJB66663; KJB66663; B456_010G151100.
DR GeneID; 105772812; -.
DR Gramene; KJB66663; KJB66663; B456_010G151100.
DR KEGG; gra:105772812; -.
DR eggNOG; KOG1001; Eukaryota.
DR OrthoDB; 11932at2759; -.
DR Proteomes; UP000032304; Chromosome 10.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF16; SNF2 DOMAIN-CONTAINING PROTEIN _ HELICASE DOMAIN-CONTAINING PROTEIN _ ZINC FINGER PROTEIN-LIKE PROTEIN; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 593..864
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 1017..1056
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1152..1320
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 47..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 642..681
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 745..789
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1126..1168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 657..677
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 749..771
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1126..1146
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1325 AA; 146145 MW; EC150EF99D014512 CRC64;
MLMMGEDNRN DSFGILSSGD LSADYKFDDF VGDGMCIDLD SINRILEENS DPPQINPEDP
SLRNMSQGDS DLESIQFQSE SPCSGFTFAD CLRNNSDDSD ARAGSTGGSF YYHGNLELSA
HDCSPVQTSS ASFKEWSAIC QGTSYRERVE IPSCSTASSF SEIDGNHALD HGDNLRFDLV
DDKTSSLFMN TKEEFGYKNA LHSPVDENTN LIFDQYDPCS VISCYVNGDD AYFADSSMQH
SPGSLNFMFE ESKEGEVVEF PTESACSSSR IIFNSQGEID NRSVSQLSMN GFSDVKKLHF
EGEGNGHVAY GKFSYTANDG LFDDKGSLQP FTHSKPCILN NKQAVYGKNE DNELITSGNI
FSHSAESLDE ASWRKSTNRV AESLSLDEAS KQSSDIYPSV SNQDFMVNGK DAHHYNHDIN
LNVSSQSFFS EGHLNLTSPE NYFSSAYPIS STKMQLGCFQ DERENKFIPS RSMGLSKVSP
ESIHSNSSDC RSYVDDDPDI CILEDISQPA RSNQSLVLVK KTSSLPNTAS STQLHNPGIG
GIRLKGNDEQ LIFRVALQGL SQPKSEASPP DGVLAVPLLR HQRIALSWMT QKEKTGLHCM
GGILADDQGL GKTVSTIALI LNERPSSSKA SSQDVRKVEL ETLNLDDDEE MKQDSDNSHV
MSNGASKKSS SPSGQAKGRP AAGTLIVCPT SVLRQWADEL HNKVTKEANL SFLVYHGSNR
TRDPLELAKY DVVLTTYSIV SMEVPKQPPV QGDDDEKGKL EGDRASSLDF PPSRKRKYPP
SSNKKGAKHK EVDDLLLDSA ARPLAKVGWF RIVLDEAQSI KNHKTQVARA CWGLRAKRRW
CLSGTPIQNA IDDLYSYFRF LRYDPYAAYK YFCSSIKIPI AKNPAKGYPK LQAILQTIML
RRTKATLLDG EPIINLPPKV IELRKVEFTK AERDFYSRLE SDSRAQFKEY AAAGTVKQNY
VNILLMLLRL RQACDHPLLV RGFDSNSSWK LSIETARKLP QEKLTFLLSC LSSLELCGIC
NDPPEDAVVT ICGHVFCNQC ISEHLTGDDK QCPTKNCKGQ LSASSVFSNT SLNSSLSEQP
GEDKSLDCSG SKVVEVIGPC SEDSLNDSSK IKAALDVLKS LAKPQDNRLR TSGCPEGSSD
LQSPDSLNGL PDGKDLVMGA SSNDSSKAPG EKAIVFSQWT RMLDLFEACL KSSSIQYRRL
DGTMSVAARD KAVKDFNTLP EVSVMIMSLK AASLGLNMVA ACHVLLLDLW WNPTTEDQAI
DRAHRIGQTR PVTVLRLTVK DTVEDRILAL QQKKRKMVAS AFGEDETGGR QTRLTVEDLE
YLFMA
//
