ID A0A0D2SZL6_GOSRA Unreviewed; 995 AA.
AC A0A0D2SZL6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=DUF4378 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_006G176300 {ECO:0000313|EMBL:KJB36775.1}, Gorai_001229
GN {ECO:0000313|EMBL:MBA0588116.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB36775.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB36775.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0588116.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0588116.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0588116.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0588116.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0588116.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0588116.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM001745; KJB36775.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000006; MBA0588116.1; -; Genomic_DNA.
DR RefSeq; XP_012486131.1; XM_012630677.1.
DR AlphaFoldDB; A0A0D2SZL6; -.
DR STRING; 29730.A0A0D2SZL6; -.
DR EnsemblPlants; KJB36775; KJB36775; B456_006G176300.
DR GeneID; 105799880; -.
DR Gramene; KJB36775; KJB36775; B456_006G176300.
DR KEGG; gra:105799880; -.
DR eggNOG; ENOG502QSHY; Eukaryota.
DR OMA; CGRISAM; -.
DR OrthoDB; 447818at2759; -.
DR Proteomes; UP000032304; Chromosome 6.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR InterPro; IPR022212; DUF3741.
DR InterPro; IPR032795; DUF3741-assoc.
DR InterPro; IPR025486; DUF4378.
DR PANTHER; PTHR46836; AFADIN; 1.
DR PANTHER; PTHR46836:SF8; AFADIN; 1.
DR Pfam; PF12552; DUF3741; 1.
DR Pfam; PF14309; DUF4378; 1.
DR Pfam; PF14383; VARLMGL; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT DOMAIN 92..119
FT /note="DUF3741"
FT /evidence="ECO:0000259|Pfam:PF14383"
FT DOMAIN 192..236
FT /note="DUF3741"
FT /evidence="ECO:0000259|Pfam:PF12552"
FT DOMAIN 842..991
FT /note="DUF4378"
FT /evidence="ECO:0000259|Pfam:PF14309"
FT REGION 1..149
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 336..359
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 405..488
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 566..763
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 783..810
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 10..82
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 87..101
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 119..133
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 336..357
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 405..426
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 433..456
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 469..488
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 566..581
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 585..604
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 615..760
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 995 AA; 111009 MW; DBB1155E5C863708 CRC64;
MEMETFGQRR PKISSFSSDQ SLVDLLPSTA PASSRGNRQL QKQRKIPKLA SDSSSCSSDT
TEEDQLTFEL TCRSSKQSTG TPMKKLLAKE MTKENESRRR PPSVIARLMG LDGLPPQQRG
HKQQKRNENS HEKVQKGSTS YSWQSSRKSS KDEQEFKDVF EVLDALKMEG ASFSSQGTVK
SKLSDTEVAF IRHKFMEAKR LSTDEKLQDS EEFNDTLEVL NSNTDLLLNY FQQPNSLFTK
HLHDLRVPPQ SHCGRVSAMK SSHTLNNENC CFAQRTGRET QMKLHCKSPM GHQEDCLNHS
YGRYTAHNPP KSPVVQLEEK NGPTIVPTRI VVLKPNLGKS QNSSRTASSP CSSHHFPSKC
TRHSEILGIQ NKEAEIWGKN KVLQDTGFSR YNSRDSREMA KEITRQMKNS FNNSPITIST
SRFRGYAGDE SSCDVSGSES ESANDSDVTT VSYRDNISWN KRRHRRSSSR SSESSVSREA
KKRLSERWKL THKSQEVHMV SRGSTLGEML ATSDREVIPG NSSGPVGVER CNEIGNHFRP
AVLNEPLGIS SRDGWKDGCL GNLSRSRSLP ASSTNFGSPG VSIRPESLRR DKNVNPKEGF
MWDRNKAVKG NFNQRGAPLP SNQRSSVKKS QLLGRSCSSS KEYSDTLAGS NVTPYQVKQN
IEGDKQSENN VSVSGASSSA MDSSSVLENA ADVNDQNKPV LSEPSQMELS PPASLNPAIV
STSDLDNLDS QEPSEGPSKQ TTPRCPVSEL ESQANCKEAD QPSPVSVIEA PFTDDLSSGS
ECFESISADL HELRMQLRQL KLESEAYEDG TLLLSSDDDS NEVSVGFAEE NGRPKAEENW
ESVYIVDVLV GSGIDGAELD TFLAAWHSPE CPVNPLVFQQ LEKKYCSLNY RSRAERRLMF
DRINSKILEM YQEYNDQPPW MISGKKIIPT WNIRELEDSL HKSLVSQNKI RQMDVGEMVL
AGECLWLDLR WDIDTIGRGI ERLLVDELVA EVLAG
//
