ID A0A0D2T1X9_GOSRA Unreviewed; 875 AA.
AC A0A0D2T1X9;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=B456_011G038100 {ECO:0000313|EMBL:KJB69698.1}, Gorai_005294
GN {ECO:0000313|EMBL:MBA0599056.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB69698.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB69698.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0599056.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0599056.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0599056.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0599056.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0599056.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0599056.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001750; KJB69698.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000011; MBA0599056.1; -; Genomic_DNA.
DR RefSeq; XP_012456795.1; XM_012601341.1.
DR AlphaFoldDB; A0A0D2T1X9; -.
DR STRING; 29730.A0A0D2T1X9; -.
DR EnsemblPlants; KJB69698; KJB69698; B456_011G038100.
DR GeneID; 105777846; -.
DR Gramene; KJB69698; KJB69698; B456_011G038100.
DR KEGG; gra:105777846; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; SCVLKCF; -.
DR OrthoDB; 364303at2759; -.
DR Proteomes; UP000032304; Chromosome 11.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR47928:SF190; OS04G0110500 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 164..198
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 265..299
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 366..400
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 436..470
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 567..601
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 783..875
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 875 AA; 97955 MW; 704E0C2D9DFFD3AD CRC64;
MAKAAPNLCF SPLTLNQNRK ENFFSSQNGC FIHKPSLKTT FLSPIFRSCI PIRISATPTR
TIDHQVTDYN AKILHFCQLG DLENAMELVC MCEKSELETK TYGSVLQLCA GLKSLTDGKK
VHSIIKSNSV GVDEALGLKL VSFYATCGDL KEGRRVFDTM EKKNVYLWNF MVSEYAKIGD
FKESICLFKI MVEKGIEVNS YTFSCVLKCF AALGSLKEGE CVHGYLLKLG FGSCNSVVNS
LIAFYFKGKR SESASELFDK LCDRDVISWN SMISGYVSNG LTERGLGIYK QMMYLGIDVD
LATIISVLVG CAKSGTLSLG KAVHSLAIKS SFERRINFSN TLLDMYSKCG DLDGALRVFE
KMGERNVVSW TSMIAGYTRD GWSDGAIILL QQMEKEGVKL DVVAITSILH ACARSGSLDN
GKDVHDYIKA NNMASNLFVC NALMDMYAKC GSMEGANSVF STMVVKDIIS WNTMVGGYSK
NCLPNEALKT FAAMLKELKP DSRTMACILP ACASLSALER GKEIHGYILR NGYSSDRHVA
NALVDLYVKC GVLGLARLLF DMIPSKDLVS WTVMIAGYGM HGYGNEAIAT FNEMRDAGIE
PDEVSFISIL YACSHSGLLE QGWRFFYIMK NDFNIEPKLE HYACMVDLLS RTGNLSKAYK
FIETLPIAPD ATIWGALLCG CRIYHDIELA EKVAERVFEL EPENTGYYVL LANIYAEAEK
WEEVKRMREK IGKKGLRKNP GCSWIEIKGR VNLFVSGNNS SHPHSKKIES LLKKMRRKMK
EEGYFPKTKY ALINADEMQK EMALCGHSEK LAMAFGLLTL PPRKTIRVTK NLRVCGDCHE
MAKFMSKETR REIVLRDSNR FHHFKDGYCS CRGFW
//
