ID A0A0D2T2P3_GOSRA Unreviewed; 718 AA.
AC A0A0D2T2P3;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=B456_008G086300 {ECO:0000313|EMBL:KJB48771.1}, Gorai_009153
GN {ECO:0000313|EMBL:MBA0592166.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB48771.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB48771.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0592166.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0592166.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0592166.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0592166.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0592166.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0592166.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001747; KJB48771.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000008; MBA0592166.1; -; Genomic_DNA.
DR RefSeq; XP_012437174.1; XM_012581720.1.
DR AlphaFoldDB; A0A0D2T2P3; -.
DR STRING; 29730.A0A0D2T2P3; -.
DR EnsemblPlants; KJB48771; KJB48771; B456_008G086300.
DR GeneID; 105763482; -.
DR Gramene; KJB48771; KJB48771; B456_008G086300.
DR KEGG; gra:105763482; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; LKCFRAM; -.
DR OrthoDB; 444332at2759; -.
DR Proteomes; UP000032304; Chromosome 8.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF2012; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 104..138
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 204..238
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 306..341
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 408..442
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 545..579
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 623..718
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 718 AA; 80526 MW; EE206F21FCD0DF3E CRC64;
MTQIPWTIQN FRNLLKTCIS HRNILTGKSL HTLYIKSLIP SSTYLSNHFI LLYSRCGLLA
TAHNAFFQTQ HPNTFSFNAI IAAYAKESLP SVAHNLFDQI PHPDLVSYNT LISAYADCGR
TEPALELFKK MRDLCFDMDG FTLSGVITAS LNDVCLIRQV HCFVVFCGFD SYASVNNALL
SCYSKEGFLR EAKRVFYEMG ECKDEVSWNS MIVAYGQHKE GARALALFQE MVRRGFDVDM
FTLASVLTAF TSLEDLLGGF QFHALLIKTG FHQNAHVASG LIDLYSKCGA GMLDCGKVFE
EVSGPDLVLW NTMISGYSLH EELSEEALKC FRAMRRIGYR PDDCSFVNVI SACSNLSSPS
QGRQIHALAI KSEVPNQIQV HNALIAMYSK CGNLPDGRRV FDKMPEHNSV SLNSMIAGYA
QHGIGTESLI LFDHMLERNI SPTSITFISV LSACAHTGKV EEGQKYFKIM KEKFGIEPEV
EHYSCMIDLF GRAGKLHEAE KLINTMPFNP GSIGWAAMLG ASKIHGNMEL ASKAANKLLQ
LEPSNAVPYV MLANMYASSG EWEEAAMVRK LMRDRGVRKK PGCSWIEVNK RIHVFVAEDI
SHPMIKEIYK YLEEMGRKIR LAGYVSDLRW SLVKEDEIEA GEKEIKLRHH SEKLAVAYGL
LSTKDGEPIL VIKNLRICGD CHNAIKFMSA VSGREITVRD THRFHCFKDG QCSCGDYW
//
