ID A0A0D2TCM7_GOSRA Unreviewed; 418 AA.
AC A0A0D2TCM7;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE RecName: Full=UBR-type domain-containing protein {ECO:0000259|PROSITE:PS51157};
GN ORFNames=B456_008G254400 {ECO:0000313|EMBL:KJB52296.1}, Gorai_010431
GN {ECO:0000313|EMBL:MBA0593490.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB52296.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB52296.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0593490.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0593490.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0593490.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0593490.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0593490.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0593490.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM001747; KJB52295.1; -; Genomic_DNA.
DR EMBL; CM001747; KJB52296.1; -; Genomic_DNA.
DR EMBL; CM001747; KJB52298.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000008; MBA0593490.1; -; Genomic_DNA.
DR RefSeq; XP_012439774.1; XM_012584320.1.
DR RefSeq; XP_012439775.1; XM_012584321.1.
DR AlphaFoldDB; A0A0D2TCM7; -.
DR STRING; 29730.A0A0D2TCM7; -.
DR EnsemblPlants; KJB52295; KJB52295; B456_008G254400.
DR EnsemblPlants; KJB52296; KJB52296; B456_008G254400.
DR EnsemblPlants; KJB52298; KJB52298; B456_008G254400.
DR GeneID; 105765304; -.
DR Gramene; KJB52295; KJB52295; B456_008G254400.
DR Gramene; KJB52296; KJB52296; B456_008G254400.
DR Gramene; KJB52298; KJB52298; B456_008G254400.
DR KEGG; gra:105765304; -.
DR eggNOG; KOG2752; Eukaryota.
DR OrthoDB; 11436at2759; -.
DR Proteomes; UP000032304; Chromosome 8.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd15542; PHD_UBR7; 1.
DR CDD; cd19677; UBR-box_UBR7; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR018247; EF_Hand_1_Ca_BS.
DR InterPro; IPR040204; UBR7.
DR InterPro; IPR047506; UBR7-like_UBR-box.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR003126; Znf_UBR.
DR PANTHER; PTHR13513; E3 UBIQUITIN-PROTEIN LIGASE UBR7; 1.
DR PANTHER; PTHR13513:SF9; E3 UBIQUITIN-PROTEIN LIGASE UBR7-RELATED; 1.
DR Pfam; PF02207; zf-UBR; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00396; ZnF_UBR1; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS00018; EF_HAND_1; 1.
DR PROSITE; PS51157; ZF_UBR; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 39..109
FT /note="UBR-type"
FT /evidence="ECO:0000259|PROSITE:PS51157"
FT ZN_FING 39..109
FT /note="UBR-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00508"
FT REGION 211..234
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 331..362
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 219..234
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 418 AA; 47151 MW; 23EA87F48A913106 CRC64;
MAADLDDDGE QTVSINEYLE SIEEEELEAD LVLGGDEGDE CTYSKGYMKR QAIFSCLTCT
PEGNAGICTA CCLSCHDGHE VLELWTKRNF RCDCGNSKFR EFSCKLSPNK DVENVENSYN
HNFKGLYCTC NRPYPDPDLQ EQEEMIQCCM CEDWFHEEHI SLGSPNEIPR DEEGEPLYED
FICKACSAVC SFLTLYPKTI RATGKQPVAS VATGKDKSVL EDIPPKDEPG KLDNDVCSDT
VQNNLVADMN HDSVSDDKKF VVGESSQNND SSSLSQSIAN SNGTCILGVD WMAASSDSEN
RPLFLSKNWR DVLCRCDKCL DMYKQKHISY LLDKEDSIAD YEKNAKQKRE EKLQKREGAE
LNFFNNLGHI EKMEILNGIA DFKDEFRSFL GSVDPSKAIT AADVNQIFEN LKNKRRRV
//
