ID A0A0D2TQE0_GOSRA Unreviewed; 652 AA.
AC A0A0D2TQE0;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_009G148800 {ECO:0000313|EMBL:KJB57116.1}, Gorai_011893
GN {ECO:0000313|EMBL:MBA0595012.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57116.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB57116.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0595012.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0595012.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0595012.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0595012.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0595012.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0595012.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the SGS3 family.
CC {ECO:0000256|ARBA:ARBA00024022}.
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DR EMBL; CM001748; KJB57116.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000009; MBA0595012.1; -; Genomic_DNA.
DR RefSeq; XP_012440610.1; XM_012585156.1.
DR AlphaFoldDB; A0A0D2TQE0; -.
DR STRING; 29730.A0A0D2TQE0; -.
DR EnsemblPlants; KJB57116; KJB57116; B456_009G148800.
DR GeneID; 105765887; -.
DR Gramene; KJB57116; KJB57116; B456_009G148800.
DR KEGG; gra:105765887; -.
DR eggNOG; ENOG502QPU5; Eukaryota.
DR OMA; TECAISH; -.
DR OrthoDB; 609229at2759; -.
DR Proteomes; UP000032304; Chromosome 9.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0051607; P:defense response to virus; IEA:InterPro.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:UniProtKB-KW.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR044287; SGS3.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR46602; PROTEIN SUPPRESSOR OF GENE SILENCING 3; 1.
DR PANTHER; PTHR46602:SF3; PROTEIN SUPPRESSOR OF GENE SILENCING 3-LIKE; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 295..333
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 367..481
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT REGION 152..195
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 211..262
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 596..652
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 508..588
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 157..180
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 224..241
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 242..259
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 621..652
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 652 AA; 74140 MW; E2558D4CD3AA9509 CRC64;
MVIFCEELNR LNSIDPLLGI TNMANELAFD LIYGVGDEKD IFELSYATFA EELQLQEILK
ESMMGSEKEL EDAASEANQK LECLVSHGLS NTECAISHVS EIHEPQSFNK QGSARWRPQQ
RFGYIEQQRI NWDDKGRDRF RWRKPTGWHN IRGRRVGDVP QTSSSKEFHA KTSSWGEGSP
LVGTGNIEDP KGKGKAIDDG WLLVSKWKSE SRGGNSVDKQ QVDLGHPNHL KGSKDDDTSA
VHEDDCESLD DEDDFDSDDS QKSYESRKKS KWFKEFFERM DALNAEEIDQ TLWHCPACQG
GPGAIKWYRS ISDLIAHSKK IGSRRVKLHQ ELAMLLEGEL CIRGTSVSPP ADPIVGTWKG
LKEEARDHQV VWPPMVVIMN TMTSNSKDGK FVGMGSHELL EHFSSFPALK AQHSYGPQGH
RGLSVLIFES SAVGYLEAER LHQNFLDQGL DKFAWNSCTN EVLPGGERQL YGFMAVKEDL
DCFNQHCQGK SKLKYELKSY QEAVLNEIKK MREDSQQLIR LKDKLEEEIK RAKTLERSVD
DLSRNLQQRM KDICIFERRV KSLHEDNKEE VESQEIFYKD QIKILEARVK ELDHKLKESG
ASPLHTGEPE PAMSGLLEEE HTPYQYNSNL GIDEDSSLEN GKLPSKSNEN GD
//