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Database: UniProt
Entry: A0A0D2TQE0_GOSRA
LinkDB: A0A0D2TQE0_GOSRA
Original site: A0A0D2TQE0_GOSRA 
ID   A0A0D2TQE0_GOSRA        Unreviewed;       652 AA.
AC   A0A0D2TQE0;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 36.
DE   RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=B456_009G148800 {ECO:0000313|EMBL:KJB57116.1}, Gorai_011893
GN   {ECO:0000313|EMBL:MBA0595012.1};
OS   Gossypium raimondii (New World cotton).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57116.1, ECO:0000313|Proteomes:UP000032304};
RN   [1] {ECO:0000313|EMBL:KJB57116.1, ECO:0000313|Proteomes:UP000032304}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=23257886; DOI=10.1038/nature11798;
RA   Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA   Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA   Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA   Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA   Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA   Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA   Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA   Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA   ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA   Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA   Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA   Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA   Wang X., Schmutz J.;
RT   "Repeated polyploidization of Gossypium genomes and the evolution of
RT   spinnable cotton fibres.";
RL   Nature 492:423-427(2012).
RN   [2] {ECO:0000313|EMBL:MBA0595012.1, ECO:0000313|Proteomes:UP000593578}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=8 {ECO:0000313|EMBL:MBA0595012.1};
RC   TISSUE=Leaf {ECO:0000313|EMBL:MBA0595012.1};
RX   PubMed=30476109;
RA   Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA   Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA   Wendel J.F.;
RT   "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT   Subgenus Houzingenia) Based on Genome Sequencing.";
RL   Genome Biol. Evol. 11:53-71(2019).
RN   [3] {ECO:0000313|EMBL:MBA0595012.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=8 {ECO:0000313|EMBL:MBA0595012.1};
RC   TISSUE=Leaf {ECO:0000313|EMBL:MBA0595012.1};
RA   Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA   Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL   Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the SGS3 family.
CC       {ECO:0000256|ARBA:ARBA00024022}.
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DR   EMBL; CM001748; KJB57116.1; -; Genomic_DNA.
DR   EMBL; JABEZZ010000009; MBA0595012.1; -; Genomic_DNA.
DR   RefSeq; XP_012440610.1; XM_012585156.1.
DR   AlphaFoldDB; A0A0D2TQE0; -.
DR   STRING; 29730.A0A0D2TQE0; -.
DR   EnsemblPlants; KJB57116; KJB57116; B456_009G148800.
DR   GeneID; 105765887; -.
DR   Gramene; KJB57116; KJB57116; B456_009G148800.
DR   KEGG; gra:105765887; -.
DR   eggNOG; ENOG502QPU5; Eukaryota.
DR   OMA; TECAISH; -.
DR   OrthoDB; 609229at2759; -.
DR   Proteomes; UP000032304; Chromosome 9.
DR   Proteomes; UP000593578; Unassembled WGS sequence.
DR   GO; GO:0051607; P:defense response to virus; IEA:InterPro.
DR   GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.70.2890; XS domain; 1.
DR   InterPro; IPR044287; SGS3.
DR   InterPro; IPR005380; XS_domain.
DR   InterPro; IPR038588; XS_domain_sf.
DR   InterPro; IPR005381; Znf-XS_domain.
DR   PANTHER; PTHR46602; PROTEIN SUPPRESSOR OF GENE SILENCING 3; 1.
DR   PANTHER; PTHR46602:SF3; PROTEIN SUPPRESSOR OF GENE SILENCING 3-LIKE; 1.
DR   Pfam; PF03468; XS; 1.
DR   Pfam; PF03470; zf-XS; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW   RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT   DOMAIN          295..333
FT                   /note="Zinc finger-XS"
FT                   /evidence="ECO:0000259|Pfam:PF03470"
FT   DOMAIN          367..481
FT                   /note="XS"
FT                   /evidence="ECO:0000259|Pfam:PF03468"
FT   REGION          152..195
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          211..262
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          596..652
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          508..588
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        157..180
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        224..241
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        242..259
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        621..652
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   652 AA;  74140 MW;  E2558D4CD3AA9509 CRC64;
     MVIFCEELNR LNSIDPLLGI TNMANELAFD LIYGVGDEKD IFELSYATFA EELQLQEILK
     ESMMGSEKEL EDAASEANQK LECLVSHGLS NTECAISHVS EIHEPQSFNK QGSARWRPQQ
     RFGYIEQQRI NWDDKGRDRF RWRKPTGWHN IRGRRVGDVP QTSSSKEFHA KTSSWGEGSP
     LVGTGNIEDP KGKGKAIDDG WLLVSKWKSE SRGGNSVDKQ QVDLGHPNHL KGSKDDDTSA
     VHEDDCESLD DEDDFDSDDS QKSYESRKKS KWFKEFFERM DALNAEEIDQ TLWHCPACQG
     GPGAIKWYRS ISDLIAHSKK IGSRRVKLHQ ELAMLLEGEL CIRGTSVSPP ADPIVGTWKG
     LKEEARDHQV VWPPMVVIMN TMTSNSKDGK FVGMGSHELL EHFSSFPALK AQHSYGPQGH
     RGLSVLIFES SAVGYLEAER LHQNFLDQGL DKFAWNSCTN EVLPGGERQL YGFMAVKEDL
     DCFNQHCQGK SKLKYELKSY QEAVLNEIKK MREDSQQLIR LKDKLEEEIK RAKTLERSVD
     DLSRNLQQRM KDICIFERRV KSLHEDNKEE VESQEIFYKD QIKILEARVK ELDHKLKESG
     ASPLHTGEPE PAMSGLLEEE HTPYQYNSNL GIDEDSSLEN GKLPSKSNEN GD
//
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