ID A0A0D2TRD9_GOSRA Unreviewed; 1391 AA.
AC A0A0D2TRD9;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=Helicase-like transcription factor CHR28 {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_009G171000 {ECO:0000313|EMBL:KJB57576.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB57576.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB57576.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; CM001748; KJB57576.1; -; Genomic_DNA.
DR STRING; 29730.A0A0D2TRD9; -.
DR EnsemblPlants; KJB57576; KJB57576; B456_009G171000.
DR Gramene; KJB57576; KJB57576; B456_009G171000.
DR eggNOG; KOG1001; Eukaryota.
DR Proteomes; UP000032304; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF16; SNF2 DOMAIN-CONTAINING PROTEIN _ HELICASE DOMAIN-CONTAINING PROTEIN _ ZINC FINGER PROTEIN-LIKE PROTEIN; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 731..913
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 1066..1105
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1199..1381
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 43..71
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 680..729
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 792..837
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1180..1199
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 704..725
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 797..827
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1391 AA; 153373 MW; F7571AE10631AF0E CRC64;
MMMTGEDNYN GSSGFLSTGY PSADFEFDGL SIDLDDFNRI LEETPGSLQS NPEDPSFRNM
SQGESAPETN QFQSELLSSE FAFGDLLRYP SEASVARAGS LGGLFDYHRE LEPPAHDSLV
QTSSASFQDF FSTGKGTSCM ERGQMSVLQI SSCSTESSFA EIDHNLVLDH GDNLNFDLVD
NRNGTESKNI AEEFDNKNAL HDLSVENMNF VFDNCGAILT NTLETPEAPE NEVAMPMEFS
SVDANLTSHN VTSNESSFCH GSDIVSDVSD PCSVLPNCMN GDVGYFAHSS MHCWYNSSNF
MFKESKEGEV IEFPTESACS SSRMIFHDQG RTNNGSVPQL SLTDFSDVKQ QHFDVKGNGH
ILSACGKLSY TANDRLFDDN GSVQPFNRIA FCAKNEYDKF VTPGNIFCNS TEGFDRAGWS
KSISRVDSLE ESKQFLSDVP PISKKVLMVN GKDAHHSHQD INLTVSSQTS LGGVHLEQYL
PSSHPITSSM VHFGCFEHEK RSTLIPSRSI GLSKVSPESI HSTSSDCRSH VDNDPDICIL
EDISQPARSH QSLVLVKKTP SLPNVAFSNP HQNSGMGGIR LKGNDERLIF RVALQGLSQP
KSEASPPDGV LTVPLLRHQR IALSWMTQKE KAGSHCWGGI LADDQGLGKT VSTIALILNE
RPPSSRASSQ DMTKVGMEML NLDDDDDDDK DDVGDEEGRK QESDSSQVMS NGASNKSSSP
SGQAKGRPAA GTLIVCPTSV LRQWAEELHN KVTSKANLSV LVYHGSNRTK DPFELAKYDV
VITTYSIVSM EVPKQPPACG DDDEKGKWES ENASSNDFPE SRKRKCPSSS NKKGVKHKKG
ADELLLDSVS RPLAKVGWFR IVLDEAQSIK NHRTQVARAC WGLRAKRRWC LSGTPIQNAI
DDLYSYFRFL RYDPYAVYKS FCSAIKIPIS KNPAKGYPKL QAILQTIMLR RTKATLLDGK
PIINLPPKVI ELKKVEFTEE ERDFYSRLES DSRAQFKEYA AAGTVKQNYV NILLMLLRLR
QACDHPLLVR GFDSNSSQRL SIETAKKLPQ ERLTFLLSCL SSLSLCGICN DPPEDAVAAV
CGHVFCNQCI SEHLTGDDYQ CPTANCKVRL GASSVFSNAT LNSSLTELPS RETSLNSSGS
KVAEVIGPYS EDSLYGSSKI KAALDVLKSL AKPQDDRLKI SGCPEGSSGL QSGDSPNGYH
EEKIPVTGES LNGSSKVLGE KAIVFSQWTR MLDLFEACLK SSSIQYRRLD GTMSVASRDK
AVKDFNTLPE VLMASYFVLC FFFFYHEVSV MIMSLKAASL GLNMVAACHV LLLDLWWNPT
TEDQAIDRAH RIGQTRPVTV LRLTVKDTVE DRILALQHKK REMVASAFGE DETGVRQSRL
TVEDLEYLFM A
//
