ID A0A0D2VQ00_GOSRA Unreviewed; 1111 AA.
AC A0A0D2VQ00;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE RecName: Full=FYVE-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_011G214100 {ECO:0000313|EMBL:KJB73085.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB73085.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB73085.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
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DR EMBL; CM001750; KJB73085.1; -; Genomic_DNA.
DR EMBL; CM001750; KJB73088.1; -; Genomic_DNA.
DR RefSeq; XP_012456234.1; XM_012600780.1.
DR AlphaFoldDB; A0A0D2VQ00; -.
DR STRING; 29730.A0A0D2VQ00; -.
DR EnsemblPlants; KJB73085; KJB73085; B456_011G214100.
DR EnsemblPlants; KJB73088; KJB73088; B456_011G214100.
DR GeneID; 105777480; -.
DR Gramene; KJB73085; KJB73085; B456_011G214100.
DR Gramene; KJB73088; KJB73088; B456_011G214100.
DR KEGG; gra:105777480; -.
DR OMA; FRIDHLY; -.
DR OrthoDB; 551430at2759; -.
DR Proteomes; UP000032304; Chromosome 11.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00065; FYVE_like_SF; 1.
DR CDD; cd13365; PH_PLC_plant-like; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR Gene3D; 2.130.10.30; Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR027988; BRX_N.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR001849; PH_domain.
DR InterPro; IPR009091; RCC1/BLIP-II.
DR InterPro; IPR000408; Reg_chr_condens.
DR InterPro; IPR000306; Znf_FYVE.
DR InterPro; IPR017455; Znf_FYVE-rel.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22870:SF415; FYVE-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR22870; REGULATOR OF CHROMOSOME CONDENSATION; 1.
DR Pfam; PF08381; BRX; 1.
DR Pfam; PF16627; BRX_assoc; 1.
DR Pfam; PF13713; BRX_N; 1.
DR Pfam; PF01363; FYVE; 1.
DR Pfam; PF16457; PH_12; 1.
DR Pfam; PF00415; RCC1; 6.
DR PRINTS; PR00633; RCCNDNSATION.
DR SMART; SM00064; FYVE; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR SUPFAM; SSF50985; RCC1/BLIP-II; 1.
DR PROSITE; PS51514; BRX; 1.
DR PROSITE; PS00626; RCC1_2; 2.
DR PROSITE; PS50012; RCC1_3; 7.
DR PROSITE; PS50178; ZF_FYVE; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00091}.
FT REPEAT 272..333
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 334..385
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 386..440
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 441..492
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 505..556
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 557..608
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 609..660
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT DOMAIN 665..727
FT /note="FYVE-type"
FT /evidence="ECO:0000259|PROSITE:PS50178"
FT DOMAIN 1038..1093
FT /note="BRX"
FT /evidence="ECO:0000259|PROSITE:PS51514"
FT REGION 135..198
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 734..810
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 837..865
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 953..1038
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 871..947
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 147..182
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 734..748
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 764..779
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 794..810
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 953..1020
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1021..1038
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1111 AA; 119707 MW; 80AAC6A1DAA92BA6 CRC64;
MLKSEGMAAV RAEQSRTADV PERDIELAIT ALKKGAPLLK YGRRGKPKFC PFRLSNDESI
LIWISGKEEK YLKLNQVTRI IPGQRTPIFQ RYPRPEKEYQ SFSLIYNDRS LDLICKDKDE
AEVWFTGLKA LISRGHHRKG RPESRSDGVS SEATSPKAPT QRSSPLSSPF GSGASSQKDG
MDSLCLHTPH ESPPKTGLEK ALSDVILYSV PPKVFYPSES ACGSMHSRSS AGSDGKAGFI
KGWNGDASRV SLSSAVSSSS QGSGHYDGDA LGDVFIWGEG TGDGVLGGGI HRIGDCSGIK
IDSLLPKALE SAVLLDVQNI ACGEQHAALV TKQGEVFSWG AECGGRLGHG VDSNVSHPKL
IDSLKNINVE LVACGEYHSC AVTLSGEMYS WGGSSGNFGL LGHGTETSQW VPKKLNGPLE
GIHVSSVSCG PWHTAVVTSA GQLFTFGDGT FGVLGHGDRK SLSVPREIES LKGLRTVRAA
CGVWHTAAVV EVMVGSSSTS NCSSGKLFTW GDGDKSRLGH GDKEARLVPT CVAALVEPNF
CKVSCGHSMT VALTTNGHVY TMGSPVYGQL GNPQADGKLP IRVEGKLTKN FVEEIACGAY
HVAVLTSRTE VYTWGKGANG RLGHGDTDDR NSPWLVEALK DKQVKSIVCG TSFTAAICLH
KSVSSVDQSK CSGCRLLFNF KRKRHNCYNC GLVFCNSCSS KKSFKASMAP NTNKPYRVCD
NCFTKLTKAS ETSSSNHYAL SRRGSMNQGP DDSVEKVEKL DSRTPAQLSR NASIESSKEL
DGGSSKRNKR LDFNSTRVSP FPNGVSQCAP LNNPKTSNAL FGSSKKFFST SLPASRIVSR
ATSPTSRRAS PHRATTPTPT LSSFSSKKVV VDDVKRTNEG LSEEIVKLRT QVEELTGKAQ
IQEVELERTT QQLKEAVAVA TEETAKCKAA KEVIKSLTAQ LKEMAERLPI GAARSSNSPS
FFYSSSTPPR DVSSAGSEQS SGPISCHEMD SNGSNSLVIS NGSGTINNNL STPTDVYHSD
GTAKNRNRTT KVEPNHGDEW VEQDEPGVYI TLVALPGGIK DLKRVRFSRR RFSEKQAEQW
WAANRARVYQ RYNVPLVDKP ALGVGREGLA H
//
