ID A0A0D2W5C2_GOSRA Unreviewed; 885 AA.
AC A0A0D2W5C2;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 34.
DE RecName: Full=CCR4-NOT transcription complex subunit 3 {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_013G123000 {ECO:0000313|EMBL:KJB80950.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB80950.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB80950.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the CNOT2/3/5 family.
CC {ECO:0000256|ARBA:ARBA00007682}.
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DR EMBL; CM001752; KJB80950.1; -; Genomic_DNA.
DR RefSeq; XP_012463115.1; XM_012607661.1.
DR AlphaFoldDB; A0A0D2W5C2; -.
DR STRING; 29730.A0A0D2W5C2; -.
DR EnsemblPlants; KJB80950; KJB80950; B456_013G123000.
DR GeneID; 105782729; -.
DR Gramene; KJB80950; KJB80950; B456_013G123000.
DR KEGG; gra:105782729; -.
DR eggNOG; KOG2150; Eukaryota.
DR OrthoDB; 10289at2759; -.
DR Proteomes; UP000032304; Chromosome 13.
DR GO; GO:0030015; C:CCR4-NOT core complex; IEA:InterPro.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR Gene3D; 2.30.30.1020; CCR4-NOT complex subunit 2/3/5, C-terminal domain; 1.
DR InterPro; IPR038635; CCR4-NOT_su2/3/5_C_sf.
DR InterPro; IPR012270; CCR4-NOT_su3/5.
DR InterPro; IPR040168; Not2/3/5.
DR InterPro; IPR007282; NOT2/3/5_C.
DR InterPro; IPR007207; Not_N.
DR PANTHER; PTHR23326; CCR4 NOT-RELATED; 1.
DR PANTHER; PTHR23326:SF1; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3; 1.
DR Pfam; PF04153; NOT2_3_5_C; 1.
DR Pfam; PF04065; Not3; 1.
DR PIRSF; PIRSF005290; NOT_su_3_5; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repressor {ECO:0000256|ARBA:ARBA00022491};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 4..236
FT /note="CCR4-Not complex component Not N-terminal"
FT /evidence="ECO:0000259|Pfam:PF04065"
FT DOMAIN 740..879
FT /note="NOT2/NOT3/NOT5 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF04153"
FT REGION 110..131
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 262..396
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 458..495
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 536..560
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 573..614
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 41..104
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 262..309
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 323..366
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 462..476
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 583..612
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 885 AA; 96849 MW; DF6DFB8BE54C6DC5 CRC64;
MGASRKLQGE IDRVLKKVQE GVDVFDSIWN KVYDTDNANQ KEKFEADLKK EIKKLQRYRD
QIKTWIQSSE IKDKKISASY EQALVDARKQ IEREMERFKI CEKETKTKAF SKEGLGQQPK
TDPKEKAKSE TRDWLNNVVG ELESQIDSFE AEIEGLSVKK GKTRPPRLTH LETSITRHKA
HIMKLELILR LLDNDELSPE QVNDVKDFLD DYVERNQEDF DEFDDVDELY SSLPLDKVES
LEDLVAIGPL SKGGPILKTS LAASSQLPQG GSSQEHVEDT ASQDGNSDIA KTPPPKSSTI
NSSAAATPAG SHVTPAPLNL PPHSLSGASS PSVLPDSNSA QGLLESTGTT NPPSPVNLSN
ATKEEDITNF PGRRPSPSLA DAGVRGIGRG LSGQPSSTIP LVSGSVASGN GALGAVPPAS
DMAKRNILGV DERLGNSSMG QSLTSPISNR MILPQAAKAN DGSAPVDSSN PNESAGLPGR
AFSPSMVSGM QWRPGSSFQN QNELVQFRGR TEIAPDIREK FLQRFQQVQQ QGHSNLLSSM
SPLAGGNHNQ FSAQQQSPLM QQFNPQSSCF SIPPGLGHGG QAPGLNSVTS ASLQQQPNSI
HQQSSQQALA TSVPKDADVG VAKVEEQLQS LPDGSSSEAI PTSGLAKNLM NEDDLKAPYA
IDSPAAVSGS LTEPARNIRD IDLSPGQPLQ YNQSSSGLGV IGRRSVSDLG AIGDSLSGST
NSGGMHDQLY NMQMLEAAYY KIPQPKDSER ARSYTPKHPA ATPASYPQVQ APIVNNPAFW
ERISMDGYGT GTDTLFVAFY YQQNTYQQYL AAKELKKQSW RYHRKYNTWF QRHEEPKIAT
DEFEQGTYVY FDFHVANDDH QHGWCQRIKT EFIFEYNYLE DELIV
//
