ID A0A0D3B4J0_BRAOL Unreviewed; 1861 AA.
AC A0A0D3B4J0;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE RecName: Full=Ionotropic glutamate receptor C-terminal domain-containing protein {ECO:0000259|SMART:SM00079};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g026680.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo3g026680.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo3g026680.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
CC -!- SIMILARITY: Belongs to the glutamate-gated ion channel (TC 1.A.10.1)
CC family. {ECO:0000256|ARBA:ARBA00008685}.
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DR STRING; 109376.A0A0D3B4J0; -.
DR EnsemblPlants; Bo3g026680.1; Bo3g026680.1; Bo3g026680.
DR Gramene; Bo3g026680.1; Bo3g026680.1; Bo3g026680.
DR eggNOG; KOG1052; Eukaryota.
DR HOGENOM; CLU_002232_0_0_1; -.
DR OMA; MATFMAN; -.
DR Proteomes; UP000032141; Chromosome C3.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0004930; F:G protein-coupled receptor activity; IEA:InterPro.
DR GO; GO:0015276; F:ligand-gated monoatomic ion channel activity; IEA:InterPro.
DR CDD; cd13686; GluR_Plant; 2.
DR CDD; cd19990; PBP1_GABAb_receptor_plant; 2.
DR Gene3D; 1.10.287.70; -; 2.
DR Gene3D; 3.40.50.2300; -; 4.
DR Gene3D; 3.40.190.10; Periplasmic binding protein-like II; 5.
DR InterPro; IPR001828; ANF_lig-bd_rcpt.
DR InterPro; IPR044440; GABAb_receptor_plant_PBP1.
DR InterPro; IPR019594; Glu/Gly-bd.
DR InterPro; IPR000337; GPCR_3.
DR InterPro; IPR015683; Ionotropic_Glu_rcpt.
DR InterPro; IPR001320; Iontro_rcpt_C.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR001638; Solute-binding_3/MltF_N.
DR PANTHER; PTHR18966:SF458; GLUTAMATE RECEPTOR 3.5; 1.
DR PANTHER; PTHR18966; IONOTROPIC GLUTAMATE RECEPTOR; 1.
DR Pfam; PF01094; ANF_receptor; 2.
DR Pfam; PF00060; Lig_chan; 2.
DR Pfam; PF10613; Lig_chan-Glu_bd; 2.
DR Pfam; PF00497; SBP_bac_3; 1.
DR PRINTS; PR01176; GABABRECEPTR.
DR PRINTS; PR00248; GPCRMGR.
DR SMART; SM00079; PBPe; 2.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 2.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 2.
PE 3: Inferred from homology;
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Ion channel {ECO:0000256|ARBA:ARBA00023303};
KW Ion transport {ECO:0000256|ARBA:ARBA00023065};
KW Ligand-gated ion channel {ECO:0000256|ARBA:ARBA00023286};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|ARBA:ARBA00022448}.
FT SIGNAL 1..25
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 26..1861
FT /note="Ionotropic glutamate receptor C-terminal domain-
FT containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002268791"
FT TRANSMEM 580..600
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 639..660
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 826..847
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 920..942
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1525..1543
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1585..1611
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1767..1791
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 461..803
FT /note="Ionotropic glutamate receptor C-terminal"
FT /evidence="ECO:0000259|SMART:SM00079"
FT DOMAIN 1404..1746
FT /note="Ionotropic glutamate receptor C-terminal"
FT /evidence="ECO:0000259|SMART:SM00079"
SQ SEQUENCE 1861 AA; 208145 MW; B3711F3AA0646189 CRC64;
MGLSIDPSVA IMALIVAILV VPMGCQRPKV VNVGAVFTFD SVIGRAAKVA LEAAVSDVNA
DRSVLKEREL RLFMEGSSCN VFHGSFGAFK VLDKEVVAMI GPLSSSIAHT LSDIAKGLQF
PLVSFAATDP TLSALQFPFF LRTTPDDAHQ MSALVDFITF HGWKEVISVY SDDELGRNGV
SALDDELYKK RSRISHKVPL SVHFEEGSVT DALKKSKSLG PRVYVLHFGP DPLLRIFRIA
QKLQMMTREY VWLATDWLSV TLDSSLIDKG TLKGLEGVVG LRQHIPQSLK VHQLTHKLKS
NGSMNAYALH AYDTVWMIAY GIEKMLNEGI NITFSYSEKL IHAEGTKLHL ERVKIFNSGK
VLLEKLLQVN FTGIAGQVRF GSGRNVIGCD YEIINVGKTG VNTVGFWSRN GGFSVEPPDS
RHTHKKTGFV SDEKLGNITW PGGGREKPRG WVIADSASPL KIVVPNRVSF VEFVTEENNS
SHQIKGLCID IFKEALKFVP YSVPYIFESF GDGHSSPNYK HIIQMVTDGV YDAAVGDFAI
VPTRSKLVDF SQPYASTGLV VVIPTNDDNP TWIFLRPFTI GLWCVVLASF LIIAVVIWIL
EHRINEDFRG PPRKQLITMI LFSFSTLFKR NQEDTISNLA RLVMIVWLFL LMVLTASYTA
NLTSILTVLQ LPSAITGIDS LRESEVPIGY QAGTFTLEYL TYSLGMARSR LVPLDSTEEY
ERALKLGPTA FGGVAAIVDE LPYIELFLAE RTGFKIVGEP FMHRGWGFAF KRDSPLAIDM
SRAILKLSET RKLQEIRMKW LCKKTCAEKS DGNPEPNQLH LKSFKGLYLV CTAISVSASL
VFVFRMVRQF VRYRRMERTS SMPLASWSSS PTMRLRELVF GFVEFVDEKE EAIKRMFRRS
NDSDNPFHVV EVQADPEMGF CVMISGVSMG LMFLCVSGFW VLPTEGAGRE SFLRNSSFSS
RPSSVNVGAL FTYDSFIGRA AKPAFMVAIE DVNADQNILR GTKLNIVFHD SNCSGFVGTM
GALQVMENKV VAAIGPQSSG IAHLISHVAN ELHVPLLSFA ATDPTLSSLQ YSYFLRSTQN
DYFQMNAIAD FVSYCRWREV VAIFVDDEYG RNGISVLGDA LAKKRAKISY KAAFRPGADK
SSLHDLLVSA NLMESRIFVV HVNPDSGLNV FSVAKSLGMM ESGYVWIATD WLLTAWDSGL
DPKTMDLLQG VVAFRHYTPE SNEKRRFKAR WKSLRTKETS GGDDDGFNSY AMYAYDTVWL
VARALDVFFS QGNRVTFSTD PNLRKTNGTN IKFSALSVFN EGERFLQVIH DMNYTGLTGP
IQFDPEKNRI NPAYDVININ SRGPHRVGYW SNHTGFSVEP PETFYSKPPN TSVEHQRLNE
IIWPGGVTKP PRGWVFPDNG EPLKIGVPNR VSYKNYASEE KNQLGVKGYC IDIFEAAVEL
LPYPVPRTYI LYGDGKRNPS YDNLVNEVAS NNFDVAVGDI TIVTNRTKFV DFTQPFMESG
LVVVAPVKGG KSSPWSFLKP FTVEMWAVTG LLFLFVGAII WILEHRFNEE FRGPPRRQII
TVFWFSFSTM FFSHRENTVS TLGRFVLLIW LFVVLIINSS YTASLTSILT VQQLTSRIEG
MDSLITSSEP IGVQDGTFAY KYLVNELNIA PSRIIPLKNE EDYLSALQLG PRGGGVAAIV
DELPYIKALL SNSNCEFRTV GQEFTRTGWG FAFQRDSPLA VDMSTAILQL SEEGKLEKIR
KKWLTYSHEC SVQIADTENY QLSVQSFWGL FLICGIVWFI ALTLFCWKVF WQCQGLRPEE
ESDEVRVSEE ASSSRSGRSL RAGSFKDLIK VVDKREVEIK EMLQQKSSKK LKGSQSSAET
P
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