ID A0A0D3CAI9_BRAOL Unreviewed; 863 AA.
AC A0A0D3CAI9;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=106295054 {ECO:0000313|EnsemblPlants:Bo5g021030.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g021030.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo5g021030.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo5g021030.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR RefSeq; XP_013586281.1; XM_013730827.1.
DR AlphaFoldDB; A0A0D3CAI9; -.
DR STRING; 109376.A0A0D3CAI9; -.
DR EnsemblPlants; Bo5g021030.1; Bo5g021030.1; Bo5g021030.
DR GeneID; 106295054; -.
DR Gramene; Bo5g021030.1; Bo5g021030.1; Bo5g021030.
DR KEGG; boe:106295054; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR OMA; INNRCFE; -.
DR OrthoDB; 1200295at2759; -.
DR Proteomes; UP000032141; Chromosome C5.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009658; P:chloroplast organization; IEA:EnsemblPlants.
DR GO; GO:0009416; P:response to light stimulus; IEA:EnsemblPlants.
DR GO; GO:0009451; P:RNA modification; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR47928:SF190; OS04G0110500 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 6.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 58..92
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 159..194
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 261..295
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 331..365
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 562..596
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 597..631
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 789..863
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 863 AA; 97323 MW; A2DCC7AAE514DA7F CRC64;
MASSSQTPHF HLNPEKSKPF QRKSRNHRNV NFQWNFGIRK LILRKSQGLS VLSSSSSSTH
FSNSQLHGLC ANGKLEEAIK LVTSMRELRV SVDEDAFVAL VRLCEWKRAH EEGSKVYDIA
MGSMSSLGVE LGNAFLAMFV RFGNLVDAWY VFGKMSERDL FSWNVLVGGY AKQGYFDEAM
CLYHRMLWVG GVKPDVYTFP CVLRTCGGIP DLARGREVHV HVVRFGYELE IDVVNALITM
YVKCGDVKSA RLVFDRMPRR DLISWNAMIS GYFENSMCCE GLELFFAMRG LSVDPDLMTM
TSVISACELL GDGRLGRDIH AYVITSGFAV DMSVCNSLTQ MYLYAGSWRE AEKVFSRMGR
KDIVSWTTMI SGYEFNFLPG KAIDAYRMMD QDCVKPDEIA VAAVLSACAT LGDLDTGVEL
HKLAIKTRLV SYVIVANNLI NMYSKCKCID KALDVFHNIP RKNVISWTSI IAGLRLNNRC
FEALIFFRLM KMTLQPNAIT LTAALAACAR IGALMCGKEI HAHVLRTGVG LDDFLPNALL
DMYVRCGRMN IAWNLFNSQK NDVSSWNILL TGYSERGEGS VVVELFDRMV MSRVRPDEIT
FISLLCGCSK SQMVKEGLIY FSRMEEYGVT PNLKHYACVV DLLGRAGELE EAHSFIQRMP
VVPDPAVWGA LLNACRIHRD IKLGELSAKR IFEVDKESVG YYILLCNLYA DCNKWRDVAR
VRRMMKENGL TVDAGCSWVE VKGKVHAFLS DDKYHPQIKE INTVLERFYE KMSEVGITKT
SSMGEAEISR DEIFCGHSER KAIAFGLINT VPGMPIWVTK NLSMCESCHD TVKFISKTVR
REISVRDAEH FHHFRDGECS CGD
//
