ID A0A0D3CND8_BRAOL Unreviewed; 2159 AA.
AC A0A0D3CND8;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 40.
DE RecName: Full=Methyl-CpG-binding domain-containing protein 9 {ECO:0008006|Google:ProtNLM};
GN Name=106294404 {ECO:0000313|EnsemblPlants:Bo5g155130.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g155130.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo5g155130.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo5g155130.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR RefSeq; XP_013585411.1; XM_013729957.1.
DR STRING; 109376.A0A0D3CND8; -.
DR EnsemblPlants; Bo5g155130.1; Bo5g155130.1; Bo5g155130.
DR GeneID; 106294404; -.
DR Gramene; Bo5g155130.1; Bo5g155130.1; Bo5g155130.
DR KEGG; boe:106294404; -.
DR eggNOG; ENOG502QW8S; Eukaryota.
DR HOGENOM; CLU_234476_0_0_1; -.
DR OMA; CTGCHET; -.
DR OrthoDB; 1216725at2759; -.
DR Proteomes; UP000032141; Chromosome C5.
DR GO; GO:0000785; C:chromatin; IEA:UniProt.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0140993; F:histone modifying activity; IEA:UniProt.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR GO; GO:0048731; P:system development; IEA:UniProt.
DR CDD; cd15519; PHD1_Lid2p_like; 1.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 1.20.920.10; Bromodomain-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR036427; Bromodomain-like_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR InterPro; IPR028942; WHIM1_dom.
DR InterPro; IPR028941; WHIM2_dom.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR47162:SF5; BNAA05G33850D PROTEIN; 1.
DR PANTHER; PTHR47162; OS02G0192300 PROTEIN; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF01429; MBD; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF15612; WHIM1; 1.
DR Pfam; PF15613; WSD; 1.
DR SMART; SM00249; PHD; 2.
DR SUPFAM; SSF54171; DNA-binding domain; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 2.
PE 4: Predicted;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 81..131
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 401..454
FT /note="FYR N-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51542"
FT DOMAIN 547..695
FT /note="FYR C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51543"
FT DOMAIN 1279..1329
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 151..170
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1830..1851
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2120..2159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1583..1617
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1830..1849
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2121..2144
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2145..2159
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2159 AA; 239466 MW; 43BB4688692B15A0 CRC64;
MELTDSSKHQ LGASTTAALD EEDHHPSFLG IDLNEIPTGA GCTSVHHEDG DYEPVEVVRS
IHDNPDPAPG APADVPGPDR DAACGACGGP ESVELVAVCD ACERGFHLCC VNDGVEAAPS
ADWMCRECVT GGERSKLWPL GVKSKLILDM NASPPSDAEG YGGEDTSDSR KHMLASSSCM
DNSLEYSMTH SSSFKPGRGH ATLEASGMMS RNIKMSVDAL DSPSLRFGFP LSLSNSSFPI
RFPSVDPSEL LLHNLRHFIS ERHGVLEDGW HVEFKQPLND YHLCAVYCAP NGNTFSSIQD
VACYLGLAVN DNYSCMDAEI RNGSSLLQEK LHMSKRRKTS RWPNNGFPEQ KGCSRTAQRR
RFPFCGQTRT TFDVSPGTLF QAGESLSSEN NGCGCEEANK GLPMQFGDFF VLSLGRIDTR
QSYHNVNMIY PIGYKSCWHD KITGSLFTCE VSDGSSGPVF KITRSPCSKS FIPIGSLVLS
CPKIDEMVEQ NIDNRSNRRD SPQEHDEDTV EILLSDLSPP LEDDILSCLR EKNLSKTLKC
LRSEVGSSQV DFHKTSSYNQ ESEVDIGDIV VEEDSLSVAW KKVSQKLVDA CSNVLKHKGT
MNFRCKHVDR ETREINWDMI NEKDSVVLYL SRFCCSLAPR IAICGKKDNS EIATLVSALS
TWLDQSRFGL DADFVQELIE RMPGAESCSN YSFLKSRISS VTVAEGALVV EPKGGKNIMG
EVFGEIPRKA KRPKLNGGHG FRNPHPPPGR PMCLRLPPGR VGDFLQLSEV FWRFREILGL
GESFLPEKLE KELVNPVFDG LLLDKSGKEA NRSEVNLSDK DCTVTEIFSV FDDSQPFSSE
NTSASVLKET KVGDYTELNI SYSSRWPCLG ALLTRTHISV LQVLICELQS KVATFVDPNF
DSGDSRSRRG RKKDDSTLSD KRNKLHMLPV NELTWPELAR RYILSLLSMD GNHESAEIAA
RESGKVFRCL QGDGGLLCGS LTGVAGMEAD SMLLAEASKK IFGSLTREND VIYVEDDDSD
DLGATETNAC NGDIPEWALV LEPVRKLPTN VGTRIRKCVY EALERNPPEW AKKILEHSIS
KEVYKGNASG PTKKAVLSLL ADVRGGDLVQ SSVKGTRKRT SIGVSDVIMK KCRAVLRGVA
AADEDKVFCT LLGRKLLNSS DNDDDGLLGS PAMVSRSLDF RTIDLRLATG AYDGSTEAFL
EDVLELWSCI RAMYADQPDC LELVETLSEK FKSLYEAEVL PLVQKLMDYR KLECTAEMKK
EIKDIVVSIN KLPKAPWDEG VCKICGVDKD DDSVLLCDTC DAGYHTYCLN PPLIRIPDGN
WYCPSCVIAK RMAQDALESY KLVRQRKGRK YQGELTRAYM EQTAHLADVM KEKDYWEFSA
EERIQLLKFL CDELLSSSLV HQHLELCAEA IIEMQQKLRS LTSEWKNTKI RQEFLRAKLA
KVEPSILKEM GEPQNSSSFA DHIGCSQQPQ DGVVDRVTHD DDTSRAAFLN NNHGKAQLET
DAQTGVSLVT SSETNISTRE KATSPGRHEL PIEVTDNMSC EKEDITETLR TSAGRNDETQ
CLKPDAVELQ TANDASSVAS QELQACQRDL NAASNEIENL QQSIKSIEAQ LLRQSIRRDF
LGSDASGRLY WGCSFPEEHP RILVDGCMSL QKPVQVDQTG SKVSSPFLRD IDHGRLMVSP
WTYYQTEAEI SELVLWLHDD DLKERDLRES ILCWKRLRFG NQHTEIKQAQ NSSSPKLAGN
LVTKAAMSME KRYGPCIKLE TETIKKRGKK TKVSEQEKLC RCECLESILP SMIHCLICHK
TFASDDEFEE HAESKCIPYS LATEEGKEIY DSSKAKESRK PDHLSLKSNA GKEVAETSNV
SELDCGLIRY QGEESISPYH FEEICSKFVT KDSNRDLVKE IGLIGSNGIP TFLPLPSTHL
NDSMLISATS SKLDGGDSGG QVIFTGSEAN GEDLNSESSM CVDRFVINGI GGPLNKPSGV
DFGLSEQKNE KASGSRLKGY CVVPQASLKR ITGKALPVFR FLKTILLDMD VALPEEALRP
SKSHPDRRRA WRAFVKSAQS IFELVQAAIV VEDMIKTEYL KNEWWYWSSL SAAAKISTLS
ALSVRLFSLD AAIMYDKSVT QSDPMDETNP LPEQKSQAAQ ERSSRANRSG KKRKEPEGS
//