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Database: UniProt
Entry: A0A0D3CND8_BRAOL
LinkDB: A0A0D3CND8_BRAOL
Original site: A0A0D3CND8_BRAOL 
ID   A0A0D3CND8_BRAOL        Unreviewed;      2159 AA.
AC   A0A0D3CND8;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 40.
DE   RecName: Full=Methyl-CpG-binding domain-containing protein 9 {ECO:0008006|Google:ProtNLM};
GN   Name=106294404 {ECO:0000313|EnsemblPlants:Bo5g155130.1};
OS   Brassica oleracea var. oleracea.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g155130.1, ECO:0000313|Proteomes:UP000032141};
RN   [1] {ECO:0000313|EnsemblPlants:Bo5g155130.1, ECO:0000313|Proteomes:UP000032141}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX   PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA   Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA   Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA   Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA   Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA   Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA   Chalhoub B., Sharpe A.G.;
RT   "Transcriptome and methylome profiling reveals relics of genome dominance
RT   in the mesopolyploid Brassica oleracea.";
RL   Genome Biol. 15:R77-R77(2014).
RN   [2] {ECO:0000313|EnsemblPlants:Bo5g155130.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (MAR-2015) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   RefSeq; XP_013585411.1; XM_013729957.1.
DR   STRING; 109376.A0A0D3CND8; -.
DR   EnsemblPlants; Bo5g155130.1; Bo5g155130.1; Bo5g155130.
DR   GeneID; 106294404; -.
DR   Gramene; Bo5g155130.1; Bo5g155130.1; Bo5g155130.
DR   KEGG; boe:106294404; -.
DR   eggNOG; ENOG502QW8S; Eukaryota.
DR   HOGENOM; CLU_234476_0_0_1; -.
DR   OMA; CTGCHET; -.
DR   OrthoDB; 1216725at2759; -.
DR   Proteomes; UP000032141; Chromosome C5.
DR   GO; GO:0000785; C:chromatin; IEA:UniProt.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0140993; F:histone modifying activity; IEA:UniProt.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR   GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR   GO; GO:0048731; P:system development; IEA:UniProt.
DR   CDD; cd15519; PHD1_Lid2p_like; 1.
DR   Gene3D; 3.30.160.360; -; 1.
DR   Gene3D; 1.20.920.10; Bromodomain-like; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR   InterPro; IPR036427; Bromodomain-like_sf.
DR   InterPro; IPR016177; DNA-bd_dom_sf.
DR   InterPro; IPR003889; FYrich_C.
DR   InterPro; IPR003888; FYrich_N.
DR   InterPro; IPR006594; LisH.
DR   InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR   InterPro; IPR028942; WHIM1_dom.
DR   InterPro; IPR028941; WHIM2_dom.
DR   InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR47162:SF5; BNAA05G33850D PROTEIN; 1.
DR   PANTHER; PTHR47162; OS02G0192300 PROTEIN; 1.
DR   Pfam; PF05965; FYRC; 1.
DR   Pfam; PF05964; FYRN; 1.
DR   Pfam; PF01429; MBD; 1.
DR   Pfam; PF00628; PHD; 1.
DR   Pfam; PF15612; WHIM1; 1.
DR   Pfam; PF15613; WSD; 1.
DR   SMART; SM00249; PHD; 2.
DR   SUPFAM; SSF54171; DNA-binding domain; 1.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR   PROSITE; PS51543; FYRC; 1.
DR   PROSITE; PS51542; FYRN; 1.
DR   PROSITE; PS50896; LISH; 1.
DR   PROSITE; PS01359; ZF_PHD_1; 1.
DR   PROSITE; PS50016; ZF_PHD_2; 2.
PE   4: Predicted;
KW   Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00146}.
FT   DOMAIN          81..131
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          401..454
FT                   /note="FYR N-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51542"
FT   DOMAIN          547..695
FT                   /note="FYR C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51543"
FT   DOMAIN          1279..1329
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   REGION          1..22
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          151..170
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1830..1851
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          2120..2159
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          1583..1617
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        1830..1849
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2121..2144
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2145..2159
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   2159 AA;  239466 MW;  43BB4688692B15A0 CRC64;
     MELTDSSKHQ LGASTTAALD EEDHHPSFLG IDLNEIPTGA GCTSVHHEDG DYEPVEVVRS
     IHDNPDPAPG APADVPGPDR DAACGACGGP ESVELVAVCD ACERGFHLCC VNDGVEAAPS
     ADWMCRECVT GGERSKLWPL GVKSKLILDM NASPPSDAEG YGGEDTSDSR KHMLASSSCM
     DNSLEYSMTH SSSFKPGRGH ATLEASGMMS RNIKMSVDAL DSPSLRFGFP LSLSNSSFPI
     RFPSVDPSEL LLHNLRHFIS ERHGVLEDGW HVEFKQPLND YHLCAVYCAP NGNTFSSIQD
     VACYLGLAVN DNYSCMDAEI RNGSSLLQEK LHMSKRRKTS RWPNNGFPEQ KGCSRTAQRR
     RFPFCGQTRT TFDVSPGTLF QAGESLSSEN NGCGCEEANK GLPMQFGDFF VLSLGRIDTR
     QSYHNVNMIY PIGYKSCWHD KITGSLFTCE VSDGSSGPVF KITRSPCSKS FIPIGSLVLS
     CPKIDEMVEQ NIDNRSNRRD SPQEHDEDTV EILLSDLSPP LEDDILSCLR EKNLSKTLKC
     LRSEVGSSQV DFHKTSSYNQ ESEVDIGDIV VEEDSLSVAW KKVSQKLVDA CSNVLKHKGT
     MNFRCKHVDR ETREINWDMI NEKDSVVLYL SRFCCSLAPR IAICGKKDNS EIATLVSALS
     TWLDQSRFGL DADFVQELIE RMPGAESCSN YSFLKSRISS VTVAEGALVV EPKGGKNIMG
     EVFGEIPRKA KRPKLNGGHG FRNPHPPPGR PMCLRLPPGR VGDFLQLSEV FWRFREILGL
     GESFLPEKLE KELVNPVFDG LLLDKSGKEA NRSEVNLSDK DCTVTEIFSV FDDSQPFSSE
     NTSASVLKET KVGDYTELNI SYSSRWPCLG ALLTRTHISV LQVLICELQS KVATFVDPNF
     DSGDSRSRRG RKKDDSTLSD KRNKLHMLPV NELTWPELAR RYILSLLSMD GNHESAEIAA
     RESGKVFRCL QGDGGLLCGS LTGVAGMEAD SMLLAEASKK IFGSLTREND VIYVEDDDSD
     DLGATETNAC NGDIPEWALV LEPVRKLPTN VGTRIRKCVY EALERNPPEW AKKILEHSIS
     KEVYKGNASG PTKKAVLSLL ADVRGGDLVQ SSVKGTRKRT SIGVSDVIMK KCRAVLRGVA
     AADEDKVFCT LLGRKLLNSS DNDDDGLLGS PAMVSRSLDF RTIDLRLATG AYDGSTEAFL
     EDVLELWSCI RAMYADQPDC LELVETLSEK FKSLYEAEVL PLVQKLMDYR KLECTAEMKK
     EIKDIVVSIN KLPKAPWDEG VCKICGVDKD DDSVLLCDTC DAGYHTYCLN PPLIRIPDGN
     WYCPSCVIAK RMAQDALESY KLVRQRKGRK YQGELTRAYM EQTAHLADVM KEKDYWEFSA
     EERIQLLKFL CDELLSSSLV HQHLELCAEA IIEMQQKLRS LTSEWKNTKI RQEFLRAKLA
     KVEPSILKEM GEPQNSSSFA DHIGCSQQPQ DGVVDRVTHD DDTSRAAFLN NNHGKAQLET
     DAQTGVSLVT SSETNISTRE KATSPGRHEL PIEVTDNMSC EKEDITETLR TSAGRNDETQ
     CLKPDAVELQ TANDASSVAS QELQACQRDL NAASNEIENL QQSIKSIEAQ LLRQSIRRDF
     LGSDASGRLY WGCSFPEEHP RILVDGCMSL QKPVQVDQTG SKVSSPFLRD IDHGRLMVSP
     WTYYQTEAEI SELVLWLHDD DLKERDLRES ILCWKRLRFG NQHTEIKQAQ NSSSPKLAGN
     LVTKAAMSME KRYGPCIKLE TETIKKRGKK TKVSEQEKLC RCECLESILP SMIHCLICHK
     TFASDDEFEE HAESKCIPYS LATEEGKEIY DSSKAKESRK PDHLSLKSNA GKEVAETSNV
     SELDCGLIRY QGEESISPYH FEEICSKFVT KDSNRDLVKE IGLIGSNGIP TFLPLPSTHL
     NDSMLISATS SKLDGGDSGG QVIFTGSEAN GEDLNSESSM CVDRFVINGI GGPLNKPSGV
     DFGLSEQKNE KASGSRLKGY CVVPQASLKR ITGKALPVFR FLKTILLDMD VALPEEALRP
     SKSHPDRRRA WRAFVKSAQS IFELVQAAIV VEDMIKTEYL KNEWWYWSSL SAAAKISTLS
     ALSVRLFSLD AAIMYDKSVT QSDPMDETNP LPEQKSQAAQ ERSSRANRSG KKRKEPEGS
//
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