ID A0A0D3CNW5_BRAOL Unreviewed; 276 AA.
AC A0A0D3CNW5;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g009290.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo6g009290.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo6g009290.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
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DR AlphaFoldDB; A0A0D3CNW5; -.
DR STRING; 109376.A0A0D3CNW5; -.
DR EnsemblPlants; Bo6g009290.1; Bo6g009290.1; Bo6g009290.
DR Gramene; Bo6g009290.1; Bo6g009290.1; Bo6g009290.
DR eggNOG; KOG0017; Eukaryota.
DR HOGENOM; CLU_001650_11_4_1; -.
DR OMA; CEKQANE; -.
DR Proteomes; UP000032141; Chromosome C6.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR35317; OS04G0629600 PROTEIN; 1.
DR PANTHER; PTHR35317:SF29; TRANSMEMBRANE PROTEIN; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 229..243
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 181..226
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 181..196
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 276 AA; 31190 MW; 4175B9665D6B8F1C CRC64;
MAAKFEIEKF NGSNFALWKL MMKAILRKDG CLAAISARPT TYTDDDKWNE MDGNAIANLH
LALADGVLSS IEEKKTAKEI WDHLAKLYEA KSLHNKIFLK RKLYTLRMGE STSVTEHINT
LNTLFSQLTS LSYKVESQER AELLLQSLPD SYDQLIINLK NNVSTDSLVF DDVAAAVLEE
ESRRKSKEDR RENSQVEALT VMRGRSMEHS SRGSHKHGRS KSRSKKTLKC YHCGKKGHLK
KDCWELKNSN PQGNVANTSD NGIALCCEAT FSSENR
//
