ID A0A0D3CVT4_BRAOL Unreviewed; 825 AA.
AC A0A0D3CVT4;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 08-NOV-2023, entry version 31.
DE RecName: Full=Smr domain-containing protein {ECO:0000259|PROSITE:PS50828};
GN Name=106300801 {ECO:0000313|EnsemblPlants:Bo6g081000.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g081000.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo6g081000.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo6g081000.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR RefSeq; XP_013592483.1; XM_013737029.1.
DR AlphaFoldDB; A0A0D3CVT4; -.
DR STRING; 109376.A0A0D3CVT4; -.
DR EnsemblPlants; Bo6g081000.1; Bo6g081000.1; Bo6g081000.
DR GeneID; 106300801; -.
DR Gramene; Bo6g081000.1; Bo6g081000.1; Bo6g081000.
DR KEGG; boe:106300801; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_009972_0_0_1; -.
DR OMA; NMTHITQ; -.
DR OrthoDB; 1200754at2759; -.
DR Proteomes; UP000032141; Chromosome C6.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR PANTHER; PTHR47447:SF17; OS12G0638900 PROTEIN; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13812; PPR_3; 2.
DR Pfam; PF17177; PPR_long; 1.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 6.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 266..300
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 301..335
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 336..370
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 371..405
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 406..440
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 441..475
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 699..775
FT /note="Smr"
FT /evidence="ECO:0000259|PROSITE:PS50828"
SQ SEQUENCE 825 AA; 92864 MW; AD35644F8D24888F CRC64;
MLRLRTAKSI PRNVISTLHR STTVSAETPL LPPSPQSPSL AANLHSPSIR LLRSFTVCSV
SRNTVTNQSP SLFRRFCSDE SGTSWTEEVE YLDESGSVIH SGKGIRSVEP GVDDHVMVGG
LKKPLMNASA VAKIVEVVQR WKWGPELETH LDKLQFLPNM VHVKQSLKIV EDVDAGLSLF
RWVKKQPWYV PCDECYVVLF DGLNKGKDFE GIQKLFEEMV QDSGRSHHHH SLGAYNQVIQ
YLAKAEKLEV AFCCFKKAQD CGCKIDTQTY NNLMMLFLNK GLPYKAFEIY ESMEKTDSLL
DGSTYELIIP SLAKSGRLDA AFKLFQQMKE RKLRPSFSVF ASLVDSMGKA GRLDTSMKVY
MEMQGYGHRP SATMFVSLID SYAKAGKLDT ALRLWDEMKS SGFRPNFGLY TMIIESHAKS
GKLEVAMSVF KDMEKAGFLP TPSTYSCLLE MHAGSGQVDS AMKIYNSMTN AGLRPGLSSY
ISLLTLLANK RLVDVAGKIL LEMKAMGYSV DVCASDVLMI YIKDASVDLA LKWLRFMGSS
GIKTNNFIIR QLFESCMKNG LYDSARPLLE TLVHSAGKVD LVLYTSILAH LVRCQDEDKE
RQLMSILSTT KHKAHAFMCG LFTGPEQRKQ PVLTFVREFY QGIDYELEEG AARYFVNVLL
NYLVLMGQIN RARCVWKVAY ENKLFPKAIV FDQHIAWSLD VRNLSVGAAL IAVVHTLHRF
RKRMLYYGVV PRRIKLVTGP TLKIVIAQML SSVESPFEVS KVVLRAPGDS VMEWFKKPIV
QQFLLNEIPS RADILMHKLN VMFPSSAPEL RSMFPPKPIM SSKSF
//
