ID A0A0D3DPS2_BRAOL Unreviewed; 329 AA.
AC A0A0D3DPS2;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=MBD domain-containing protein {ECO:0000259|PROSITE:PS50982};
GN Name=106312407 {ECO:0000313|EnsemblPlants:Bo8g066360.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo8g066360.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo8g066360.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo8g066360.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR RefSeq; XP_013605375.1; XM_013749921.1.
DR AlphaFoldDB; A0A0D3DPS2; -.
DR STRING; 109376.A0A0D3DPS2; -.
DR EnsemblPlants; Bo8g066360.1; Bo8g066360.1; Bo8g066360.
DR GeneID; 106312407; -.
DR Gramene; Bo8g066360.1; Bo8g066360.1; Bo8g066360.
DR KEGG; boe:106312407; -.
DR eggNOG; ENOG502RYIM; Eukaryota.
DR HOGENOM; CLU_051759_0_0_1; -.
DR OMA; EMVFIEL; -.
DR OrthoDB; 622866at2759; -.
DR Proteomes; UP000032141; Chromosome C8.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR039622; MBD10/11.
DR InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR PANTHER; PTHR33729; METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED; 1.
DR PANTHER; PTHR33729:SF6; METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 10; 1.
DR Pfam; PF01429; MBD; 1.
DR SUPFAM; SSF54171; DNA-binding domain; 1.
DR PROSITE; PS50982; MBD; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 4..74
FT /note="MBD"
FT /evidence="ECO:0000259|PROSITE:PS50982"
FT REGION 61..329
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 67..89
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 90..271
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 279..309
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 310..329
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 329 AA; 36204 MW; B34DF7BC125241AC CRC64;
MENTDELVSI ELPAPASWKK LFYPKRAGTP RKTEIVFMAP TGEEISSRKQ LEQYLKAHPG
NPVISEFDWT TGETPRRSSR ISQKVKATTP TPEREPHMKK RRSSLTKKDL KEAAEKENKE
GEKKEGGAEV AEAEKENKEG EKTEAENKEG EVVTDKKENM EVDTSEVEKK KNEEENKEGE
VETDKKEPME VDASEGEKKT ESGGIAEEPP KVEESQEVVV TDGENKPAEK ETENKAEANG
EKNEPSLDAE ANKGTETKEA EEKKTDGEAN LDAEVNKGNG IQEADEKKAE AAAAVSEEKS
NDVKGEDTNR SGEANQVQQQ QGAAASVSC
//
