ID A0A0D3GMM1_9ORYZ Unreviewed; 949 AA.
AC A0A0D3GMM1;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=Small RNA 2'-O-methyltransferase {ECO:0000256|ARBA:ARBA00021330};
DE EC=2.1.1.386 {ECO:0000256|ARBA:ARBA00035025};
OS Oryza barthii.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART07G04060.2};
RN [1] {ECO:0000313|EnsemblPlants:OBART07G04060.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART07G04060.2};
RX DOI=10.1007/s12284-009-9025-z;
RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L.,
RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B.,
RA Knight J., Niazi F., Egholm M., Wing R.A.;
RT "De novo next generation sequencing of plant genomes.";
RL Rice 2:35-43(2009).
RN [2] {ECO:0000313|EnsemblPlants:OBART07G04060.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-adenosyl-L-methionine + small RNA 3'-end nucleotide = H(+) +
CC S-adenosyl-L-homocysteine + small RNA 3'-end 2'-O-methylnucleotide;
CC Xref=Rhea:RHEA:37887, Rhea:RHEA-COMP:10415, Rhea:RHEA-COMP:10416,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:57856, ChEBI:CHEBI:59789,
CC ChEBI:CHEBI:74896, ChEBI:CHEBI:74898; EC=2.1.1.386;
CC Evidence={ECO:0000256|ARBA:ARBA00034992};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. HEN1 family.
CC {ECO:0000256|ARBA:ARBA00009026}.
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DR AlphaFoldDB; A0A0D3GMM1; -.
DR STRING; 65489.A0A0D3GMM1; -.
DR PaxDb; 65489-OBART07G04060-2; -.
DR EnsemblPlants; OBART07G04060.2; OBART07G04060.2; OBART07G04060.
DR Gramene; OBART07G04060.2; OBART07G04060.2; OBART07G04060.
DR eggNOG; KOG1045; Eukaryota.
DR Proteomes; UP000026960; Chromosome 7.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0008171; F:O-methyltransferase activity; IEA:InterPro.
DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:UniProtKB-KW.
DR GO; GO:0001510; P:RNA methylation; IEA:InterPro.
DR Gene3D; 3.30.160.20; -; 1.
DR Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR InterPro; IPR026610; Hen1.
DR InterPro; IPR040870; HEN1_dsRBD2.
DR InterPro; IPR040813; Hen1_Lam_C.
DR InterPro; IPR013217; Methyltransf_12.
DR InterPro; IPR029063; SAM-dependent_MTases_sf.
DR PANTHER; PTHR21404; HEN1; 1.
DR PANTHER; PTHR21404:SF3; SMALL RNA 2'-O-METHYLTRANSFERASE; 1.
DR Pfam; PF17842; dsRBD2; 1.
DR Pfam; PF18441; Hen1_Lam_C; 1.
DR Pfam; PF21224; Hen1_LCD; 1.
DR Pfam; PF08242; Methyltransf_12; 1.
DR SUPFAM; SSF54768; dsRNA-binding domain-like; 1.
DR SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
PE 3: Inferred from homology;
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603};
KW Reference proteome {ECO:0000313|Proteomes:UP000026960};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158};
KW S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 233..369
FT /note="Small RNA 2'-O-methyltransferase Hen1 La-motif C-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF18441"
FT DOMAIN 371..509
FT /note="HEN1 double-stranded RNA binding"
FT /evidence="ECO:0000259|Pfam:PF17842"
FT DOMAIN 724..820
FT /note="Methyltransferase type 12"
FT /evidence="ECO:0000259|Pfam:PF08242"
SQ SEQUENCE 949 AA; 104638 MW; 0F905E3DCCE468D6 CRC64;
MPLRLRGGGG SKRGMPAAPT VTPKAVIHQK YGAKACYSVE EVREAVDGGC PGLALPQQTR
SVYRCSLDLP GLTVVTPGTF VRKKDAEQAA AQIALDKLGI QPTANAPSTP EEAWDELIAR
ISGFFADENF PSSSHPLIGH MCVTFRRTGD RFGMIPMSAI AACDVKVIGL CKLIDPKAEF
DPLLVLSLIY NAAKKSPGVS VSDSNFWIRS QKPYSPEAVD LALQHWSGIT NPIEVDGIFV
PCVMEDEPKT IRLTLSHNEH YMGDIVSKLS ASDSSHAVVS RTVGKASSEI RLYFSAPNVQ
FVSEISNNVV SSLGDGYMES LINKRASFIS GQTIYGDAIL ANVGYTRRDS ELHTEDVTLS
NYYRILLGKS PDGNYKISRD SILVAELPSV YSRSSWKGLS PRDLLCSFCR LHRLAEPYFV
VNRVSASCKV LGSHVSSEEM DVLKNTENQC ASGGKNDKEN PDMFKCDVKI YSKKQELLLE
YSTADTWSKE SDAIHNSSLK VLIWFCSYFK QPNKHVLKLS HSKSTDGFTI CPDNFLHEFA
MFLSIYGNTG GDDSSTCSTV GSLSMDTSKQ KLENNAVLAH VDGPDSGVFP SHGSLTCISY
TASLVVKDKT NRYMLESNNE FEFEIGTGAV KNQIESCVSQ LSVNQSACFI AELPPRDLIL
AAANEFSHDL SKISRDNCFL EFSVKVTEPL EDRMEKALFN PPLSKQRVEF AVRYINELHA
TTLVDFGCGS GSLLDSLLEH PTTLEEVVGV DISRKGLTRA AKSLHQKLSK KSLMQTSVPT
AVLYDGSITD FDSRLYRFDI GTCLEVIEHV EEDQASLFGN VVLSSFCPTV LIVSTPNYEY
NPILQRSAMP NKEEEPEENA GPCKFRNHDH KFEWTRSQFQ HWATGLAEKH NYSVEFSGVG
GSGDEPGFAS QIAVFRRMAS GQDEVCQEGE LHQPYELLWE WPNASLPSH
//