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Entry: A0A0D8JV89_COCIM
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ID   A0A0D8JV89_COCIM        Unreviewed;       771 AA.
AC   A0A0D8JV89;
DT   27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT   27-MAY-2015, sequence version 1.
DT   24-JAN-2024, entry version 36.
DE   SubName: Full=CCR4-NOT core complex subunit Not4 {ECO:0000313|EMBL:KJF60178.1};
GN   ORFNames=CIMG_01358 {ECO:0000313|EMBL:KJF60178.1};
OS   Coccidioides immitis (strain RS) (Valley fever fungus).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
OC   Eurotiomycetidae; Onygenales; Onygenaceae; Coccidioides.
OX   NCBI_TaxID=246410 {ECO:0000313|EMBL:KJF60178.1, ECO:0000313|Proteomes:UP000001261};
RN   [1] {ECO:0000313|Proteomes:UP000001261}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RS {ECO:0000313|Proteomes:UP000001261};
RX   PubMed=19717792; DOI=10.1101/gr.087551.108;
RA   Sharpton T.J., Stajich J.E., Rounsley S.D., Gardner M.J., Wortman J.R.,
RA   Jordar V.S., Maiti R., Kodira C.D., Neafsey D.E., Zeng Q., Hung C.-Y.,
RA   McMahan C., Muszewska A., Grynberg M., Mandel M.A., Kellner E.M.,
RA   Barker B.M., Galgiani J.N., Orbach M.J., Kirkland T.N., Cole G.T.,
RA   Henn M.R., Birren B.W., Taylor J.W.;
RT   "Comparative genomic analyses of the human fungal pathogens Coccidioides
RT   and their relatives.";
RL   Genome Res. 19:1722-1731(2009).
RN   [2] {ECO:0000313|Proteomes:UP000001261}
RP   GENOME REANNOTATION.
RC   STRAIN=RS {ECO:0000313|Proteomes:UP000001261};
RX   PubMed=20516208; DOI=10.1101/gr.103911.109;
RA   Neafsey D.E., Barker B.M., Sharpton T.J., Stajich J.E., Park D.J.,
RA   Whiston E., Hung C.-Y., McMahan C., White J., Sykes S., Heiman D.,
RA   Young S., Zeng Q., Abouelleil A., Aftuck L., Bessette D., Brown A.,
RA   FitzGerald M., Lui A., Macdonald J.P., Priest M., Orbach M.J.,
RA   Galgiani J.N., Kirkland T.N., Cole G.T., Birren B.W., Henn M.R.,
RA   Taylor J.W., Rounsley S.D.;
RT   "Population genomic sequencing of Coccidioides fungi reveals recent
RT   hybridization and transposon control.";
RL   Genome Res. 20:938-946(2010).
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DR   EMBL; GG704911; KJF60178.1; -; Genomic_DNA.
DR   RefSeq; XP_004445815.1; XM_004445758.1.
DR   AlphaFoldDB; A0A0D8JV89; -.
DR   GeneID; 4566714; -.
DR   VEuPathDB; FungiDB:CIMG_01358; -.
DR   OrthoDB; 1748at2759; -.
DR   Proteomes; UP000001261; Unassembled WGS sequence.
DR   GO; GO:0030014; C:CCR4-NOT complex; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:InterPro.
DR   CDD; cd16618; mRING-HC-C4C4_CNOT4; 1.
DR   CDD; cd12438; RRM_CNOT4; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR034261; CNOT4_RRM.
DR   InterPro; IPR039780; Mot2.
DR   InterPro; IPR039515; NOT4_mRING-HC-C4C4.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR003954; RRM_dom_euk.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR12603; CCR4-NOT TRANSCRIPTION COMPLEX RELATED; 1.
DR   PANTHER; PTHR12603:SF0; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   Pfam; PF14570; zf-RING_4; 1.
DR   SMART; SM00361; RRM_1; 1.
DR   SUPFAM; SSF57850; RING/U-box; 1.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR   PROSITE; PS50102; RRM; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001261};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT   DOMAIN          18..62
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   DOMAIN          121..208
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   REGION          230..388
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          464..523
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          77..110
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        238..286
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        346..361
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        362..387
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        501..523
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   771 AA;  83400 MW;  C452F0E07CA54776 CRC64;
     MASRTQNDTV IDDDDEICPL CIEEFDLSDK NFKPCPCGYQ ICQFCYNNIK THSEEGRCPN
     CRRVYDENTI QYRVPDADEL KADLALKHRK AAAAKKKEQE KREIEASSRK NLAGVRVVQK
     NLVYVIGLNP TIRDENQLLQ TLRGDQYFGQ YGEIEKIVVS KAKPGGNPNQ GIGVYVTFAK
     KSDAASCIAA VDGSANGDRV LRAQYGTTKY CSSFLRNEQC NNRNCTFLHE TGEDSDSFSR
     QDLSSMNTIS SQRPHPNYPN VSANQSRAYT PGSQSGPSSS LSMQRHTNKD EGTRMPANDS
     PALPSSASWA NKDALAHRTR RPSVAASCGT PSPKPATATI ATKPEESRAA TEKRTHQNVE
     ESRQHTPTPG PSSRLEQRDS VSPRRPLSVS QDRGMVLYNL VKAINSPEFR FQFSAAGLSA
     DELAFIENHP SLIDPYGGVK RRAMREKAEQ ERAKQEVEAK MLLHANQPEE ETLEGGSSQL
     GGEPEESHSG PGPAGRSGRE QQAIQPPSQQ ATASSSAVGS PVSAGHQFQS LNVNGRALTP
     LQQQQLMLLK STTGQQSGLL DQLQTSSING YDHNPLSRPS AFQNQMPPVG AISGHARQSS
     RFSFANESNA KNPNHRLLSQ QAAVMQASTT NPMATANAQQ HGLSSHFFTS GVQGPPPGLK
     TAGTPPVSGG GMFAQGHGFT STMNNNLGLN VKQDGNADLM RELMRARSGT SGGGVQTLEA
     TKLDLADPSI LQARMHQSNA TAVAGQGLYG SQGQGGYNHS NMVFNGGFAR W
//
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