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Database: UniProt
Entry: A0A0D9QTF6_PLAFR
LinkDB: A0A0D9QTF6_PLAFR
Original site: A0A0D9QTF6_PLAFR 
ID   A0A0D9QTF6_PLAFR        Unreviewed;       913 AA.
AC   A0A0D9QTF6;
DT   27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT   27-MAY-2015, sequence version 1.
DT   08-NOV-2023, entry version 38.
DE   RecName: Full=DNA ligase {ECO:0000256|RuleBase:RU000617};
DE            EC=6.5.1.1 {ECO:0000256|RuleBase:RU000617};
GN   ORFNames=AK88_00281 {ECO:0000313|EMBL:KJP90112.1};
OS   Plasmodium fragile.
OC   Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
OC   Plasmodiidae; Plasmodium; Plasmodium (Plasmodium).
OX   NCBI_TaxID=5857 {ECO:0000313|EMBL:KJP90112.1, ECO:0000313|Proteomes:UP000054561};
RN   [1] {ECO:0000313|EMBL:KJP90112.1, ECO:0000313|Proteomes:UP000054561}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=nilgiri {ECO:0000313|Proteomes:UP000054561};
RG   The Broad Institute Genomics Platform;
RG   The Broad Institute Genome Sequencing Center for Infectious Disease;
RA   Neafsey D., Duraisingh M., Young S.K., Zeng Q., Gargeya S., Abouelleil A.,
RA   Alvarado L., Chapman S.B., Gainer-Dewar J., Goldberg J., Griggs A.,
RA   Gujja S., Hansen M., Howarth C., Imamovic A., Larimer J., Pearson M.,
RA   Poon T.W., Priest M., Roberts A., Saif S., Shea T., Sykes S., Wortman J.,
RA   Nusbaum C., Birren B.;
RT   "The Genome Sequence of Plasmodium fragile nilgiri.";
RL   Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC         (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC         diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003,
CC         ECO:0000256|RuleBase:RU000617};
CC   -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family.
CC       {ECO:0000256|ARBA:ARBA00007572, ECO:0000256|RuleBase:RU004196}.
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DR   EMBL; KQ001646; KJP90112.1; -; Genomic_DNA.
DR   RefSeq; XP_012333355.1; XM_012477932.1.
DR   AlphaFoldDB; A0A0D9QTF6; -.
DR   EnsemblProtists; KJP90112; KJP90112; AK88_00281.
DR   GeneID; 24265595; -.
DR   VEuPathDB; PlasmoDB:AK88_00281; -.
DR   OMA; CYATHSE; -.
DR   OrthoDB; 162082at2759; -.
DR   Proteomes; UP000054561; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0071897; P:DNA biosynthetic process; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR   GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR   CDD; cd07900; Adenylation_DNA_ligase_I_Euk; 1.
DR   CDD; cd07969; OBF_DNA_ligase_I; 1.
DR   Gene3D; 3.30.1490.70; -; 1.
DR   Gene3D; 1.10.3260.10; DNA ligase, ATP-dependent, N-terminal domain; 1.
DR   Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   InterPro; IPR000977; DNA_ligase_ATP-dep.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR   InterPro; IPR012308; DNA_ligase_ATP-dep_N.
DR   InterPro; IPR036599; DNA_ligase_N_sf.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   NCBIfam; TIGR00574; dnl1; 1.
DR   PANTHER; PTHR45674:SF4; DNA LIGASE 1; 1.
DR   PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF04675; DNA_ligase_A_N; 1.
DR   SUPFAM; SSF117018; ATP-dependent DNA ligase DNA-binding domain; 1.
DR   SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR   PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU000617};
KW   DNA damage {ECO:0000256|RuleBase:RU000617};
KW   DNA recombination {ECO:0000256|RuleBase:RU000617};
KW   DNA repair {ECO:0000256|RuleBase:RU000617};
KW   DNA replication {ECO:0000256|ARBA:ARBA00022705,
KW   ECO:0000256|RuleBase:RU000617};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000256|RuleBase:RU000617};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW   ECO:0000256|RuleBase:RU000617}; Signal {ECO:0000256|SAM:SignalP}.
FT   SIGNAL          1..15
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           16..913
FT                   /note="DNA ligase"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5012791295"
FT   DOMAIN          644..780
FT                   /note="ATP-dependent DNA ligase family profile"
FT                   /evidence="ECO:0000259|PROSITE:PS50160"
FT   REGION          78..116
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          378..400
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        380..398
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   913 AA;  103672 MW;  0AC9102E1A961041 CRC64;
     MKLLVLLLIA RMLLCKINSC MRREYAYIIP FMQKNKFYKR KTVFNVKVFT NFTNIASNRH
     SDFLKCFSFP KKTMDEQKDE TDVKEESKMK KEEKETTKRK ITSDGNTKAK KAKGKSENDI
     KKGSLFNCSV TEDDKVSDLT SPKFNPVHFD VSNLYLSPKD KEKHKFKDSL LFTFLTNTFN
     QIEELKGSGT GSKKNVAIIL SNVFRVLIYY SPNDLIPAVY ITLNKVAPDY LNVEAGVGEA
     LILKTMSEAY SRTESSIKKD LQQIEDLGII AESCSCKMRT IFPLPRLTIQ SVFNELKSIP
     NLSGSNSQQK KREVIKKLLV SAKTSEAKYI VRFLQQRLRI GVNSATVLQA LSYAFIITRP
     SIPEEIVQKG KLMNEQLLSG KGSGIGQDST VSGTTTEDDM NKLKGEKEGV VKVEKTNEES
     PSNIKKEKEN QSVPDHFDFE ALVQSIKIRN EKISKPNLFY DIGKEGDTRL LPIFKELKKS
     YCGANDDSDI FECMEKSVKS ALCELPNIEI IIQNLLSGDD MNTLSKKCTV KAGLPVQPML
     AKPTKGIQEV LDRFNNVTFT CEYKYDGERA QIHYIDKDNI KIFSRNLETM TEKYPDVIQI
     VRDQIISGAK ECIIDSEVVA YDIENKKILP FQVLTTRKRK DVDIENIKVK ICLFPFDLIC
     CNGVPVIKEP LEIRRKLLYS LLKCKDGVLC YATHSEMNNI EDIDIFLQDA IENNCEGLMV
     KTLLDNASYE PSRRSLNWLK VKKDYIEGLS DSVDLVPIAG YYGKGKRSGV YGAFVLATYN
     SETENFQTVC KAGTGFSDEI LGSLYETLSD KIIPNKKSYY EVSDKLNPDV WFDAHYVWEV
     KAADLSLSPV HTAAIGVYSD DKGIGLRFPR FLRLREDKNA EQATTSQQIV DLYEAQFTYN
     KNKNDFNEES ESE
//
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