ID A0A0D9V6A4_9ORYZ Unreviewed; 449 AA.
AC A0A0D9V6A4;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:LPERR01G28070.1};
OS Leersia perrieri.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Leersia.
OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR01G28070.1, ECO:0000313|Proteomes:UP000032180};
RN [1] {ECO:0000313|EnsemblPlants:LPERR01G28070.1, ECO:0000313|Proteomes:UP000032180}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.A.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:LPERR01G28070.1, ECO:0000313|Proteomes:UP000032180}
RP NUCLEOTIDE SEQUENCE.
RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J.,
RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L.,
RA Zhang J., Wing R.;
RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:LPERR01G28070.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TFIIF beta subunit family.
CC {ECO:0000256|ARBA:ARBA00009543}.
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DR AlphaFoldDB; A0A0D9V6A4; -.
DR STRING; 77586.A0A0D9V6A4; -.
DR EnsemblPlants; LPERR01G28070.1; LPERR01G28070.1; LPERR01G28070.
DR Gramene; LPERR01G28070.1; LPERR01G28070.1; LPERR01G28070.
DR eggNOG; KOG1082; Eukaryota.
DR eggNOG; KOG2905; Eukaryota.
DR HOGENOM; CLU_610275_0_0_1; -.
DR Proteomes; UP000032180; Chromosome 1.
DR GO; GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR CDD; cd07980; TFIIF_beta; 1.
DR Gene3D; 2.170.270.10; SET domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR001214; SET_dom.
DR InterPro; IPR046341; SET_dom_sf.
DR InterPro; IPR003196; TFIIF_beta.
DR InterPro; IPR040450; TFIIF_beta_HTH.
DR InterPro; IPR011039; TFIIF_interaction.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR10445; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2; 1.
DR PANTHER; PTHR10445:SF5; OS01G0772200 PROTEIN; 1.
DR Pfam; PF00856; SET; 1.
DR Pfam; PF02270; TFIIF_beta; 1.
DR SUPFAM; SSF50916; Rap30/74 interaction domains; 1.
DR SUPFAM; SSF82199; SET domain; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032180};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 169..202
FT /note="TFIIF beta subunit HTH"
FT /evidence="ECO:0000259|Pfam:PF02270"
FT DOMAIN 366..418
FT /note="SET"
FT /evidence="ECO:0000259|Pfam:PF00856"
SQ SEQUENCE 449 AA; 49449 MW; B00E55083F15769C CRC64;
MAEEAKNLET ARADRSVWLM KCPTVVSRAW QEAASASSSD AAGGSNPNPN PVVAKFKMEM
AQTGKGNTPK SYSLNMFKDF VPMCVFSESN QGKLACEGKV GHKFDMEPHS DNLVDYGKLC
RERTEKSMIK NRKLMVLAND NGMSMRPLPG LQKEKKLLPV KPSDMKRTRR DRRELENILF
KLFERQPNWS LKNLMQETDQ PEDLAAAASA CRALRAAASA VTVGRAADAA HGLEPLPIPF
DNLVDGKPYA YFLYTPFSLT PSTSSPRVQP WGCTWARPPC PTWPRSDLGG FPSAGCACPQ
GACGGAECPC ADPEAEAVGS EVEAEAGMGS LRECGDGCAC GPSCGNRRTQ RGVTVRLRVV
RHRKKGWGLH AAEVIRRGQF VCEYAGELLT TEEARRRQRL YDDLASVEIS SKEKSLLSVM
VMLDFDRRAC HAFAGAYVVL VYFLRKKHE
//
