ID A0A0D9W6L6_9ORYZ Unreviewed; 1413 AA.
AC A0A0D9W6L6;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
OS Leersia perrieri.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Leersia.
OX NCBI_TaxID=77586 {ECO:0000313|EnsemblPlants:LPERR04G13730.2, ECO:0000313|Proteomes:UP000032180};
RN [1] {ECO:0000313|EnsemblPlants:LPERR04G13730.2, ECO:0000313|Proteomes:UP000032180}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.A.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:LPERR04G13730.2, ECO:0000313|Proteomes:UP000032180}
RP NUCLEOTIDE SEQUENCE.
RA Yu Y., Lee S., de Baynast K., Wissotski M., Liu L., Talag J.,
RA Goicoechea J., Angelova A., Jetty R., Kudrna D., Golser W., Rivera L.,
RA Zhang J., Wing R.;
RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:LPERR04G13730.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|RuleBase:RU004279}.
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DR EnsemblPlants; LPERR04G13730.2; LPERR04G13730.2; LPERR04G13730.
DR Gramene; LPERR04G13730.2; LPERR04G13730.2; LPERR04G13730.
DR HOGENOM; CLU_000487_3_0_1; -.
DR Proteomes; UP000032180; Chromosome 4.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009536; C:plastid; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032180};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 276..568
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT REGION 35..63
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 35..50
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1413 AA; 156588 MW; 259A7850A82E22E1 CRC64;
MVSSPPRIHP SLLPTRPKPL LIPIAAATLT LPLSSAGSRS AETPTRAAAS SGASPGRMAR
PEERLRCTKE PFIEDVGTRR IKSIRFSMFS GNEVRQSAEV QVWNSKLYNM EMQPVPNGLL
DKRMGAANKL GECSTCHGSF AECPGHFGYL KLALPVFNVG FFNCILDVLK CICKSCSRVL
LMEKDRLEFL KKMRNPKADP LQKSVAKKGR AGLVILHDCS KTLDGSTEEL KSALSHKKEK
ISISAVRMLD PATVLSLFKR MSDEDCELLN LGDRPEKLIV TEIAVPPVPI RPSVFVAGGR
MSNEDSITVI LKSIANTNSI LKENLQTGVQ FMKCFDCWQH LQLQVVEYIN SDAPSLPESQ
HRGLVQRLKG KTGRFRGNLS GKRTEYTGRT VISPDPNLRI TEVAIPVLMA RVLTYPERVS
YYNIEKLRQC IRNGPHKHPG ANFIIQPDGT KLRIAARDLK YGCIVERHLE DGDIVLFNRQ
PSLHRMSIMS HRARIMPWRT LRFNESVCNP YNADFDGDEM NLHVPQTEEA RTEALMLMGV
QNNLCTPKNG EILVASTQDF LTSSFLVTRK DNFYDRSSFT LLCSYLGDAM ENIDLPTPAL
IKPIELWTGK QLFSVLVRPN ACTKVFLNLT VKEKNYTKIK DEDKDKVKPP EAMCPNDGFV
YFRNSELLSG QVGKKTLGNG NKDGMFSILV RDYNSHAAAS CMNRLAKFSA RFIGNHGFSI
GVDDVQPGEH LNQQKKKEID EGYKTCHDLI ASYSKGALTL QPGCDAAQTL ELQITSALNK
LRETAGNICM DTLHWRNSPL IMSQCGSKGS PINISQMVAC VGQQTVGGRR APNGFIDRTL
PHFPVNSVTP AAKGFVANSF YTGLTATEFF FHTMGGREGL VDTAVKTAET GYMSRRLMKG
LEDLSVFYDQ TVRNASGGIV QFLYGDDGMD PAKMEGDDGK PLNLDQLFMK VMATCPRRGQ
NTLSPVEILQ ILNDKLSEHE ASSNHGCSEK FKQLLTNFLE NRIKLLKSTR RALRLDEDHV
EKDSSIEESI AANISGISRK QLQVFLDTCL SRYHSKKIEA GASIGAIGAQ SIGEPGTQMT
LKTFHFAGVA SMNVTLGVPR IKEIINAAKK ISTPIITAEL ISQKDVLSAR IVKGSMEKAV
LGEVAEAIKI VLKSSQPNLV VKLDMQCIEA LHMGISADTV QLSILNHPKI KLKSEHVRVI
DKAKLRIYPA GIDKSKLLYE LHNLKSMLPK VIVKGIPTVE RAVISEHGKD DNKTYSLLVE
GTNLLAVMGT PGVDAMKTTS NHIMEVNRTL GIEAARRSII DEIQYTMKSH GMNIDSRHMM
LLADLMTYKG EILGITRYGI AKMKSSVLML ASFEKTAEHL FNASYSGRED QIEGVSECII
MGIPMQLGTG ILKVRQRLDH LPEFKYQPDP ILS
//
