ID A0A0D9YQX0_9ORYZ Unreviewed; 1240 AA.
AC A0A0D9YQX0;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
OS Oryza glumipatula.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM02G13320.1};
RN [1] {ECO:0000313|EnsemblPlants:OGLUM02G13320.1}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.A., Panaud O., Oliveira A.C.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:OGLUM02G13320.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR AlphaFoldDB; A0A0D9YQX0; -.
DR STRING; 40148.A0A0D9YQX0; -.
DR EnsemblPlants; OGLUM02G13320.1; OGLUM02G13320.1; OGLUM02G13320.
DR Gramene; OGLUM02G13320.1; OGLUM02G13320.1; OGLUM02G13320.
DR eggNOG; KOG0922; Eukaryota.
DR HOGENOM; CLU_001832_2_1_1; -.
DR Proteomes; UP000026961; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd17971; DEXHc_DHX8; 1.
DR CDD; cd21691; GH2-like_DHX8; 1.
DR CDD; cd05684; S1_DHX8_helicase; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR044762; DHX8/Prp22_DEXHc.
DR InterPro; IPR049588; DHX8_GH2-like.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR049621; S1_DHX8_helicase.
DR InterPro; IPR003029; S1_domain.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF85; ATP-DEPENDENT RNA HELICASE DHX8; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR Pfam; PF00575; S1; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000026961}.
FT DOMAIN 282..352
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 597..760
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 778..958
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 87..118
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 131..273
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 352..389
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 143..266
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1240 AA; 140204 MW; 867C147A0576F698 CRC64;
MAPTAAAAGP SDDGLRKLEY LSLVSKVCSE LETHIGVGDK VLAEFITELG RDSASVADFD
TKLKANGADL PDYFVRTLLT IIHAILPPPS DSRNPSSASQ PAAGGSKFPG LSRPDDPDRA
RNLRLELERD AEEAAATAAP APARDDRGRR RDERGRDRGR DDRGRDDRGR DRDYERGGRD
HDRSRGRDRD HGRDRDRDRA RDGDRQRGHD YGRDRDQDRD HDRDREGERR RDRDKDRGRD
IDRDMDRDHR RGRRYDDEEE PEQFGGRKEG ALVNSSGEPE LYQVYRGRVT RVMDTGCFVR
LEDVRGGREG LVHISQMATR RVANAKEMVK RDQEVYVKVV SVKGQKLSLS MRDVDQDTGR
DLLPIQRGGD DAPRANPSGG SASGVGVGSG KRLGLSGIMI AEEDEVAPPS RRPLKRMSSP
ERWEAKQLIA SGVLDVRDYP MFDEDGDGML YQEEGAEEEQ EIELNEDEPA FLQGQSRFSI
DMSPVKIFKN PEGSLSRAAA LQTALIKERR EVREQEQRAM LDSIPKDLNR PWEDPMPDTG
ERHLAQELRG VGLSAYDMPE WKKEAYGKAL TFGQRSKLSI QDQRQSLPIY KLKKELIQAV
HDNQVLVVIG ETGSGKTTQV TQYLAEAGYT TRGKIGCTQP RRVAAMSVAK RVAEEFGCRL
GEEVGYAIRF EDCTGPDTVI KYMTDGMLLR EILVDENLSQ YSVIMLDEAH ERTIHTDVLF
GLLKQLIKRR SDMRLIVTSA TLDAEKFSGY FFNCNIFTIP GRTFPVEILY TKQPESDYLD
AALITVLQIH LTEPEGDILL FLTGQEEIDH ACQCLYERMK GLGKDVPELI ILPVYSALPS
EMQSKIFDPA PPGKRKVVVA TNIAEASLTI DGIYYVVDPG FAKINVYNSK QGLDSLVITP
ISQASAKQRA GRAGRTGPGK CYRLYTESAY RNEMSPTTIP EIQRINLGST VLNMKAMGIN
DLLSFDFMDP PAPQALISAM EQLYSLGALD EEGLLTKLGR KMAEFPLDPP LSKMLLASVD
LGCSDEILTI IAMIQTGNIF YRPREKQAQA DQKRAKFFQP EGDHLTLLAV YEAWKAKNFS
GPWCFENFVQ SRSLRRAQDV RKQLLTIMDR YKLDVVSAGR NFTKIRKAIT AGFFFHAARK
DPQEGYRTLV ENQPVYIHPS SALFQRQPDW VIYHELVMTT KEYMREVTVI DPKWLTELAP
RFYKSADPTK MSKRKRQERI EPLYDRYHEP NSWRLSKRRA
//
