ID A0A0E0BC09_9ORYZ Unreviewed; 810 AA.
AC A0A0E0BC09;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=DNA ligase {ECO:0000256|RuleBase:RU000617};
DE EC=6.5.1.1 {ECO:0000256|RuleBase:RU000617};
OS Oryza glumipatula.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM10G13870.1};
RN [1] {ECO:0000313|EnsemblPlants:OGLUM10G13870.1}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.A., Panaud O., Oliveira A.C.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:OGLUM10G13870.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003,
CC ECO:0000256|RuleBase:RU000617};
CC -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family.
CC {ECO:0000256|ARBA:ARBA00007572, ECO:0000256|RuleBase:RU004196}.
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DR AlphaFoldDB; A0A0E0BC09; -.
DR STRING; 40148.A0A0E0BC09; -.
DR EnsemblPlants; OGLUM10G13870.1; OGLUM10G13870.1; OGLUM10G13870.
DR Gramene; OGLUM10G13870.1; OGLUM10G13870.1; OGLUM10G13870.
DR eggNOG; KOG0967; Eukaryota.
DR HOGENOM; CLU_005138_4_0_1; -.
DR Proteomes; UP000026961; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR GO; GO:0071897; P:DNA biosynthetic process; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR CDD; cd07900; Adenylation_DNA_ligase_I_Euk; 1.
DR CDD; cd07969; OBF_DNA_ligase_I; 1.
DR Gene3D; 3.30.1490.70; -; 1.
DR Gene3D; 1.10.3260.10; DNA ligase, ATP-dependent, N-terminal domain; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR000977; DNA_ligase_ATP-dep.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR InterPro; IPR012308; DNA_ligase_ATP-dep_N.
DR InterPro; IPR036599; DNA_ligase_N_sf.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR NCBIfam; TIGR00574; dnl1; 1.
DR PANTHER; PTHR45674:SF4; DNA LIGASE 1; 1.
DR PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR Pfam; PF04675; DNA_ligase_A_N; 1.
DR SUPFAM; SSF117018; ATP-dependent DNA ligase DNA-binding domain; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU000617};
KW DNA damage {ECO:0000256|RuleBase:RU000617};
KW DNA recombination {ECO:0000256|RuleBase:RU000617};
KW DNA repair {ECO:0000256|RuleBase:RU000617};
KW DNA replication {ECO:0000256|ARBA:ARBA00022705};
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000256|RuleBase:RU000617};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW ECO:0000256|RuleBase:RU000617};
KW Reference proteome {ECO:0000313|Proteomes:UP000026961}.
FT DOMAIN 543..679
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
FT REGION 1..173
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..135
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 149..173
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 810 AA; 89195 MW; 984CDB1DFBAB8357 CRC64;
MSASAGGGGG GGGKRTVADV LMGNARDAAR KAKKGAAPSP KKLKTQPQPA AEADGGAVAK
PEEKPHSPVK PKRSSSPTKS KSPGEGKRSE SMAAGAKPEA KEKPSPKKPK TLGAKSDTKC
SAEGVEKEKR RSPSPTKAKA LASESQDIKK PPSPKKTKAM DAPKSEEKDT TLELKKKGSE
FNPMAAAYWN PGEPVPFLFL ARALDLISNE SGRIVITEIL SNVFRTVIAT TPEDLLATVY
LSANRIAPPH EGTELGIGDA SIIRALAEAY GRREEHVKKN LKELGDLGLV AKASRLSQKM
MYKPKPLTIS HVLAKFRTIA KESGKDSQDK KRNHIKGLLV AATDCEPQYI TRLLQSKMRI
GLAEKTVQMA LGQAAVYSEK HSPPSKIQSP FEEAAKIIKQ VYSVLPIYDK IVPAILEVGV
WKLPEICSFS IGVPVGPMLA KATKSVSEII DKFQGLEYTC EYKYDGERAQ IHCLEDGSVE
IYSRNAERNT GKYPDVVDAV SRFRKPTVKS FVLDCEIVAY DREKKKILPF QILSTRARKG
VTISDIKVSV CTFGFDILYI NGKPLLQEQL KVRREHLYNS FEEVPGVFQL ATSITSNDLE
EIQKFLDTAV SSSCEGLIIK TLDKDATYEP AKRSNNWLKL KKDYMDSIGD SLDLVPIAAF
HGRGKRTGVY GSFLLACYDE QNEEYQTICN IGTGFSEQQL EERSVSLRTK AIPKPKAYYR
FADTMDPDVW FEPSEVWEVK AADLSISPVH RAANGIVDPN KGISLRFPRL LRVRDDKNPE
QATTSEQVAD MYRAQKIYHA NNNNDDEDDD
//
