ID   A0A0E0CY48_9ORYZ        Unreviewed;       527 AA.
AC   A0A0E0CY48;
DT   27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT   27-MAY-2015, sequence version 1.
DT   27-MAR-2024, entry version 25.
DE   RecName: Full=Transcription initiation factor IIF subunit alpha {ECO:0000256|RuleBase:RU366044};
OS   Oryza meridionalis.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=40149 {ECO:0000313|EnsemblPlants:OMERI03G10040.1};
RN   [1] {ECO:0000313|EnsemblPlants:OMERI03G10040.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=OR44 {ECO:0000313|EnsemblPlants:OMERI03G10040.1};
RA   Wing R.A., Panaud O., Henry R.;
RL   Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EnsemblPlants:OMERI03G10040.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (APR-2015) to UniProtKB.
CC   -!- FUNCTION: TFIIF is a general transcription initiation factor that binds
CC       to RNA polymerase II and helps to recruit it to the initiation complex
CC       in collaboration with TFIIB. It promotes transcription elongation.
CC       {ECO:0000256|RuleBase:RU366044}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC       ECO:0000256|RuleBase:RU366044}.
CC   -!- SIMILARITY: Belongs to the TFIIF alpha subunit family.
CC       {ECO:0000256|ARBA:ARBA00005249, ECO:0000256|RuleBase:RU366044}.
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DR   AlphaFoldDB; A0A0E0CY48; -.
DR   STRING; 40149.A0A0E0CY48; -.
DR   EnsemblPlants; OMERI03G10040.1; OMERI03G10040.1; OMERI03G10040.
DR   Gramene; OMERI03G10040.1; OMERI03G10040.1; OMERI03G10040.
DR   eggNOG; KOG2393; Eukaryota.
DR   HOGENOM; CLU_020656_1_0_1; -.
DR   Proteomes; UP000008021; Chromosome 3.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0032968; P:positive regulation of transcription elongation by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR   InterPro; IPR008851; TFIIF-alpha.
DR   InterPro; IPR011039; TFIIF_interaction.
DR   PANTHER; PTHR13011:SF0; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 1; 1.
DR   PANTHER; PTHR13011; TFIIF-ALPHA; 1.
DR   Pfam; PF05793; TFIIF_alpha; 1.
DR   SUPFAM; SSF50916; Rap30/74 interaction domains; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|RuleBase:RU366044};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU366044};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008021};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU366044};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW   ECO:0000256|RuleBase:RU366044}.
FT   REGION          85..111
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          225..428
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        91..111
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        226..274
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        275..304
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        314..350
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        404..428
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   527 AA;  58465 MW;  EA333D402C5F7F20 CRC64;
     MGVAADGLVL KAACERCGSS SDLHGTGCRH ATLCVSCGSA MARSGDCCPV CAAPIASLIR
     EYNVLVDTTG EKQYTIGKFT TGVPPFSDRE NAGSRSWSLH PEGQQGRQPT GNIWENCNNR
     KSCILEDDTG DYQYQGQIQG LQSAASTYYL LMMHGKDVHA VPADSWYNFS KISQYKQLTL
     EEAEEKMSRR RSTATGYGRW MMKAATNGAA AFSSDVTQLD DANEGETNQV HLKKGNKNRD
     ENKSDKGSGE ERAHVPMTKG REEEGSKDRD FDLDDEIEKG DDWEHEEIFT DDEEAVDVDT
     GEGGDLADPE IPAPPEIKQD DNEKHGGVGL SKSGKELKKL LRRAAGQNKS DDDDEDTDED
     ESPSPVLAPK QQDQLKSEPQ EDNHSKPTVP GHPYSTPHVS KSNQKRRQRG DDSKTCATPK
     KPKIEPDTKK IVVKEETSCS LEPTSEPFAS ARSDTNVSPI TVEEIRVVLR LYAPIAMRDF
     SKDFMPRFSP RLRSPEDREV FLANLRKISH LQKINGQKYI ILLEEYK
//