ID A0A0E0GBU5_ORYNI Unreviewed; 979 AA.
AC A0A0E0GBU5;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 44.
DE RecName: Full=Helicase ATP-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4536 {ECO:0000313|EnsemblPlants:ONIVA02G32140.2};
RN [1] {ECO:0000313|EnsemblPlants:ONIVA02G32140.2}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=SL10 {ECO:0000313|EnsemblPlants:ONIVA02G32140.2};
RA Wing R.A., Hsing Y.;
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ONIVA02G32140.2}
RP IDENTIFICATION.
RC STRAIN=SL10 {ECO:0000313|EnsemblPlants:ONIVA02G32140.2};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:13066;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC {ECO:0000256|ARBA:ARBA00007913}.
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DR AlphaFoldDB; A0A0E0GBU5; -.
DR EnsemblPlants; ONIVA02G32140.2; ONIVA02G32140.2; ONIVA02G32140.
DR Gramene; ONIVA02G32140.2; ONIVA02G32140.2; ONIVA02G32140.
DR eggNOG; KOG1803; Eukaryota.
DR HOGENOM; CLU_001666_8_1_1; -.
DR OMA; YMSAIPM; -.
DR Proteomes; UP000006591; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR CDD; cd18044; DEXXQc_SMUBP2; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 2.40.30.270; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR InterPro; IPR048761; SMUBP-2_HCS1_1B.
DR PANTHER; PTHR43788:SF20; AAA+ ATPASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR43788; DNA2/NAM7 HELICASE FAMILY MEMBER; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF21138; SMUBP-2_HCS1_1B; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00487; DEXDc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006591}.
FT DOMAIN 499..752
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|SMART:SM00487"
FT DOMAIN 518..733
FT /note="AAA+ ATPase"
FT /evidence="ECO:0000259|SMART:SM00382"
FT REGION 29..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 593..648
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 29..44
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..99
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 979 AA; 107046 MW; DCB64E5F60EB4EEB CRC64;
MSIDLLPCRF LLSPSAAGRV PSRRAITLLS AGASPSTPSR SAGAPSVRQR RVRAAPSVPA
KQAARPRPAG ENGRTTTRRR RRRKQQGEEG EERGERGCVP SMEEASIRVG TLYQNGDPLG
RKELGRCVVE WLRQGMQSMA SKFASAELQG DMADLDAAAL AQEWGSADGR LGFVIQAQPY
MSAIPMPKGL EALCLKACTH YPTLFDHFQR ELRDVLQSCQ NQGLISDWRS TQSWKLLKEM
ANSVQHREAV RRTVPRPKAV HGSIGVSLNK VKLMQRRIEQ YVTHMSDLLC IERDVELEFT
QEELNASPML DNDSEPPKPV EYLVSHGQSQ QEQCDTICNL NVISSSTGLG GLHLVLFRIE
GGHKLPPTTL SPGDMVCVRT CNSRGEGATS CMQGFVYNLG EDGCSITLAL ESRHGDPTFS
RLFGKSVRID RIQGLADALT YERNLEALII LQRNGLQKSN ASIGVVATLF GDNKDVMKME
QNHLTDWGES SAPDPRISER YALDASQLKA LSLGLNKKRP VLIIQGPPGT GKTVLLTELI
VRAVQQGENV LVTAPSNAAV DNMVERLSNT GLNIVRVGNP ARISPSVASK SLAEIVNRRL
EQFRKELERK RSDLRKDLSY CIEDDSLAAG IRQLLKQLGR DLEKKEKEMI REVLSEAQVV
LSTNTGAADP LIRRTCCFDL VIIDEAGQAI EPSCWIPILQ GKRCILAGDH CQLAPVILSR
KALDGGLGKS LLERASSLHN GLLTTRLTVQ HRMNDSIASW ASKEMYHGLL KSSHSVASQT
LADSPVVKAT WITRCPLLLL DTRMPYGALD TGCGEQIDLA GTGSFYNDGE ADIVTQHVLN
LVHCGVSPTA IAVQSPYIAQ VQLLRERLEE YPGLSGVEVS TIDSFQGREA DAVVISMVRS
NPLGAVGFLG DSRRMNVAIT RACRHVTVVC DTSTICHSTF LARLLRHIRR YGQVKHVVPG
SLDGVSGLGF SQPTLPSIS
//
