ID A0A0E0GJS7_ORYNI Unreviewed; 527 AA.
AC A0A0E0GJS7;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=Transcription initiation factor IIF subunit alpha {ECO:0000256|RuleBase:RU366044};
OS Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4536 {ECO:0000313|EnsemblPlants:ONIVA03G11390.1};
RN [1] {ECO:0000313|EnsemblPlants:ONIVA03G11390.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=SL10 {ECO:0000313|EnsemblPlants:ONIVA03G11390.1};
RA Wing R.A., Hsing Y.;
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ONIVA03G11390.1}
RP IDENTIFICATION.
RC STRAIN=SL10 {ECO:0000313|EnsemblPlants:ONIVA03G11390.1};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- FUNCTION: TFIIF is a general transcription initiation factor that binds
CC to RNA polymerase II and helps to recruit it to the initiation complex
CC in collaboration with TFIIB. It promotes transcription elongation.
CC {ECO:0000256|RuleBase:RU366044}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU366044}.
CC -!- SIMILARITY: Belongs to the TFIIF alpha subunit family.
CC {ECO:0000256|ARBA:ARBA00005249, ECO:0000256|RuleBase:RU366044}.
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DR AlphaFoldDB; A0A0E0GJS7; -.
DR SMR; A0A0E0GJS7; -.
DR STRING; 4536.A0A0E0GJS7; -.
DR EnsemblPlants; ONIVA03G11390.1; ONIVA03G11390.1; ONIVA03G11390.
DR Gramene; ONIVA03G11390.1; ONIVA03G11390.1; ONIVA03G11390.
DR eggNOG; KOG2393; Eukaryota.
DR HOGENOM; CLU_020656_1_0_1; -.
DR OMA; DGRFNAY; -.
DR Proteomes; UP000006591; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0032968; P:positive regulation of transcription elongation by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR InterPro; IPR008851; TFIIF-alpha.
DR InterPro; IPR011039; TFIIF_interaction.
DR PANTHER; PTHR13011:SF0; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 1; 1.
DR PANTHER; PTHR13011; TFIIF-ALPHA; 1.
DR Pfam; PF05793; TFIIF_alpha; 1.
DR SUPFAM; SSF50916; Rap30/74 interaction domains; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|RuleBase:RU366044};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU366044};
KW Reference proteome {ECO:0000313|Proteomes:UP000006591};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU366044};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|RuleBase:RU366044}.
FT REGION 85..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 223..429
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 91..111
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 224..274
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 275..306
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 314..349
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 404..429
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 527 AA; 58426 MW; 70B84B21C568604A CRC64;
MGVSADGLVL KAACERCGSS SDLHGTGCRH ATLCVSCGSA MARSGDCCPV CAAPIASLIR
EYNVLVDTTG EKQYTIGKFT TGVPPFSDRE NAGSRSWSLH PEGQQGRQPT GNIWENCSNR
KSCILEDDTG DYQYQGQIQG LQSAASTYYL LMMHGKDVHA VPADSWYNFS KISQYKQLTL
EEAEEKMSRR RSTATGYGRW MMKAATNGAA AFSSDVTQLD DANEGETDQV HLKKGNKNGD
ENKSDKGSGE ERAHVPMTKG REEEGSKDRD FDLDDEIEKG DDWEHEEIFT DDDEAVDVDP
EEGGDLADPE IPAPPEIKQD DNEKHGGVGL SKSGKELKKL LRRAAGQNES DDDDEDTDED
ESPSPVLAPK QQDQLKSEPQ EDNHSKPTVL GHPYSTPHVS KSNQKRRQRG DDSKTCATPK
KPKIEPDTKK IVVKEETSCS LEPTSEPFAS ARSDTNVSPI TVEEIRVVLR LYAPIAMRDF
SKDFMPRFSP RLRSPEDREV FLANLRKISH LQKINGQKYI ILLEEYK
//
