ID A0A0E0K296_ORYPU Unreviewed; 396 AA.
AC A0A0E0K296;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 13-SEP-2023, entry version 36.
DE RecName: Full=HTH La-type RNA-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza punctata (Red rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC02G21560.3};
RN [1] {ECO:0000313|EnsemblPlants:OPUNC02G21560.3}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:OPUNC02G21560.3}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
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DR AlphaFoldDB; A0A0E0K296; -.
DR EnsemblPlants; OPUNC02G21560.3; OPUNC02G21560.3; OPUNC02G21560.
DR Gramene; OPUNC02G21560.3; OPUNC02G21560.3; OPUNC02G21560.
DR Proteomes; UP000026962; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd08030; LA_like_plant; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR045180; La_dom_prot.
DR InterPro; IPR006630; La_HTH.
DR InterPro; IPR014886; La_xRRM.
DR InterPro; IPR002344; Lupus_La.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR22792; LUPUS LA PROTEIN-RELATED; 1.
DR PANTHER; PTHR22792:SF79; OS02G0610400 PROTEIN; 1.
DR Pfam; PF05383; La; 1.
DR Pfam; PF08777; RRM_3; 1.
DR PRINTS; PR00302; LUPUSLA.
DR SMART; SM00715; LA; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50961; HTH_LA; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS51939; XRRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000026962};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00332}.
FT DOMAIN 10..114
FT /note="HTH La-type RNA-binding"
FT /evidence="ECO:0000259|PROSITE:PS50961"
FT DOMAIN 244..377
FT /note="XRRM"
FT /evidence="ECO:0000259|PROSITE:PS51939"
FT DOMAIN 257..334
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 127..152
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 172..267
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 353..396
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 174..202
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..229
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 238..256
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 373..387
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 396 AA; 43420 MW; 98637EB6340AA83B CRC64;
MAAAAATAAS SIDEAKAKSV LRQVEFYFSD SNLPRDKFLR ETVEQREDGL VSLALICSFA
RMKSHLGLDA AVKPETVPEE TVLAVAEVLR CSPVLRVSED EEEEAKSVLE KNLFFAGANL
EIKPKKEFDA ETESKKEAYE KTHPKKDEQS EGYPKGLIVA FKLKRIMVDG AVQPNSADND
TATEEGTPNS MKKTSAEGSE ECATANSDME EQKPSDDMTE VKEVNAAEAI ESGDKCTIDA
LPESEKKGDN ETLSKDDRVL SGNANSPISR EDLKETFKKF GTVRYADFSI GDDSGYLRFE
DPKAAEKARM SAVLADEGGL IVKDHIVTLE PVTGEAEKDY WNTIRGIQGK YKDNRSYKGR
AGKNYKGGKQ FNGKRGRHSD SSDKGSNKTQ KVEAVA
//
