ID   A0A0E0KN29_ORYPU        Unreviewed;       947 AA.
AC   A0A0E0KN29;
DT   27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT   27-MAY-2015, sequence version 1.
DT   27-MAR-2024, entry version 47.
DE   RecName: Full=Vacuolar protein sorting-associated protein 41 homolog {ECO:0000256|PIRNR:PIRNR028921};
OS   Oryza punctata (Red rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC04G03500.1};
RN   [1] {ECO:0000313|EnsemblPlants:OPUNC04G03500.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Wing R.;
RT   "Oryza genome evolution.";
RL   Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EnsemblPlants:OPUNC04G03500.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (APR-2015) to UniProtKB.
CC   -!- FUNCTION: Required for vacuolar assembly and vacuolar traffic.
CC       {ECO:0000256|PIRNR:PIRNR028921}.
CC   -!- SIMILARITY: Belongs to the VPS41 family.
CC       {ECO:0000256|ARBA:ARBA00009582, ECO:0000256|PIRNR:PIRNR028921}.
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DR   AlphaFoldDB; A0A0E0KN29; -.
DR   STRING; 4537.A0A0E0KN29; -.
DR   EnsemblPlants; OPUNC02G20920.1; OPUNC02G20920.1; OPUNC02G20920.
DR   EnsemblPlants; OPUNC04G03500.1; OPUNC04G03500.1; OPUNC04G03500.
DR   Gramene; OPUNC02G20920.1; OPUNC02G20920.1; OPUNC02G20920.
DR   Gramene; OPUNC04G03500.1; OPUNC04G03500.1; OPUNC04G03500.
DR   eggNOG; KOG2066; Eukaryota.
DR   HOGENOM; CLU_001285_2_2_1; -.
DR   OMA; PQLVWQD; -.
DR   Proteomes; UP000026962; Chromosome 2.
DR   Proteomes; UP000026962; Chromosome 4.
DR   GO; GO:0030897; C:HOPS complex; IEA:UniProtKB-UniRule.
DR   GO; GO:0005770; C:late endosome; IEA:UniProtKB-UniRule.
DR   GO; GO:0034058; P:endosomal vesicle fusion; IEA:UniProtKB-UniRule.
DR   GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule.
DR   GO; GO:0006623; P:protein targeting to vacuole; IEA:InterPro.
DR   GO; GO:0007034; P:vacuolar transport; IEA:UniProtKB-UniRule.
DR   CDD; cd16687; RING-H2_Vps8; 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   InterPro; IPR000547; Clathrin_H-chain/VPS_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR016902; VPS41.
DR   InterPro; IPR045111; Vps41/Vps8.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR12616; VACUOLAR PROTEIN SORTING VPS41; 1.
DR   PANTHER; PTHR12616:SF1; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG; 1.
DR   Pfam; PF00637; Clathrin; 1.
DR   Pfam; PF00400; WD40; 1.
DR   PIRSF; PIRSF028921; VPS41; 1.
DR   SMART; SM00299; CLH; 1.
DR   SMART; SM00320; WD40; 2.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50236; CHCR; 1.
DR   PROSITE; PS50082; WD_REPEATS_2; 1.
PE   3: Inferred from homology;
KW   Protein transport {ECO:0000256|PIRNR:PIRNR028921};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026962};
KW   Transport {ECO:0000256|PIRNR:PIRNR028921};
KW   WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221}.
FT   REPEAT          95..125
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REGION          1..47
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          914..936
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        21..41
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   947 AA;  105981 MW;  2FEEAF8DFD1A5D81 CRC64;
     MSTAARHGHP PSHENGVGGH ADDEPDEEED GEEEDGEDEE EEPRLKYQRL GGSVPAIVST
     DAAAAIAVAD RMVALGTHNG TLHILDFQGN QVKEIAAHTA TINDISFDGD GEYIGSCSDD
     GTVVISSLFT DEKLKFEYHR PMKAIALDPN YYHNYRRFAT GGLAGQVLVL TKKSWGGGYH
     KKVLRDGEGP IHSMKWRTDL LAWANDAGVK VHDMKTDKGI AFIERPKGIP RPEFLLPQLV
     WQDDTILVIG WGTSVKIAAI RTDSSQGLNG IQRSITASNE KYVDIVGSFQ TGYHISGIAP
     FGDLLVVLAY IPEEEDKENS FSNSVPSRQG TAQRPEIHLV SWKNDELTTD ALPIHGYEHY
     KAKDYALAHA PFSGSSNAGG QWAAGDEPLY YIVSPKDIVV AKPRDAEDHI SWLLQHGWHE
     KALAAVEAGQ GRTELLDEVG SRYLDHLIIE RKYAEAARLC PKLLRGSPSA WERWVFHFAH
     LRQLAVLVPY IPTENPQLSD TAYEVALVAL TTNPSFHELL LTTVKKWPPT LYSASPVISA
     IEPQINSSSM TDSLKEALAE LYVINSQYDK ALSLYAELLK PEVFEFIEKH NLHDAIHDKV
     VNLMILDSKR TVNLLIQHRD TIPPNEVVGQ LLHASKSFDK RHLLHLYLHA LFETDMNAGK
     DYHDMQVELY AEYEPRMLIP FLRTSQHYRL DKAYEIFAQK DLVREQVFVL GRMGNAKEAL
     STIINKLEDI QEAVEFVMEQ HDDELWEELI RQCLQKPEMV GMLLEHTVGN LDPLYIVSLV
     PDGLEIPRLR DRLVKIVTDY RTETSLRHGC NDILKADCVN LLVKYYYEAR RGVYMASMDE
     EVTVTRVAEG SSRANERSSS LRALEIKSRT RCGARCCLCF DPLSIQDISV IVFYCCHAYH
     TSCLEGGLDL MKSNSSTQDS DEGSEDDEGT PSGESRMRCV LCTTAAA
//