ID A0A0E0PVF1_ORYRU Unreviewed; 885 AA.
AC A0A0E0PVF1;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 45.
DE RecName: Full=Homeobox domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza rufipogon (Brownbeard rice) (Asian wild rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI06G08550.2, ECO:0000313|Proteomes:UP000008022};
RN [1] {ECO:0000313|Proteomes:UP000008022}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. W1943 {ECO:0000313|Proteomes:UP000008022};
RA Zhao Q.;
RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ORUFI06G08550.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the PHD-associated homeobox family.
CC {ECO:0000256|ARBA:ARBA00007427}.
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DR AlphaFoldDB; A0A0E0PVF1; -.
DR STRING; 4529.A0A0E0PVF1; -.
DR EnsemblPlants; ORUFI06G08550.2; ORUFI06G08550.2; ORUFI06G08550.
DR Gramene; ORUFI06G08550.2; ORUFI06G08550.2; ORUFI06G08550.
DR eggNOG; KOG4299; Eukaryota.
DR HOGENOM; CLU_011923_0_0_1; -.
DR OMA; HFGPAIN; -.
DR Proteomes; UP000008022; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0001217; F:DNA-binding transcription repressor activity; IEA:EnsemblPlants.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IEA:EnsemblPlants.
DR GO; GO:0009939; P:positive regulation of gibberellic acid mediated signaling pathway; IEA:EnsemblPlants.
DR CDD; cd00086; homeodomain; 1.
DR CDD; cd15504; PHD_PRHA_like; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR045876; PRHA-like_PHD-finger.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR12628:SF22; HOMEOBOX PROTEIN HAZ1; 1.
DR PANTHER; PTHR12628; POLYCOMB-LIKE TRANSCRIPTION FACTOR; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108}; Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Reference proteome {ECO:0000313|Proteomes:UP000008022};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 337..394
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 701..761
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DNA_BIND 703..762
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT REGION 57..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 135..247
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 431..588
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 622..692
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 770..790
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 804..885
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 140..163
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 228..247
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 451..468
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 515..529
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 556..571
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 674..692
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 772..790
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 806..853
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 861..885
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 885 AA; 97350 MW; E58DB330564F325C CRC64;
MSLPRRLLLR RRRAAAVQSG GARLRRRRSR RSPSLLLPSF FLPTPTPGDR GLQLRAARGG
GGGGRTAAEA AEDERDNGGC ARRRLTAVKA IICMDKTTTS DLVLDNDNIG SNAGSAQEPL
TTNGKTSGVR NRYKQTVKRG RKGSQISPSK TYPLRSSHSN VRVLRSASKK KNETPIVPTN
DNTAVQRVAK KRKRSKPLRP APSRVLRSTS EKKNKAHNEL LNDGAGVQPA EKKRKVGRPP
KGGTPKDDYL MIRKRVRYVL NRMNYEQSLI QAYASEGWKG QSLEKIRPEK ELERAKVEIL
RCKSRIREAF RNLDSLLSEG KLDESMFDSA GEISSEDIFC AACGSKDVTL KNDIILCDGI
CDRGFHQYCL NPPLLAEDIP QGDEGWLCPA CDCKIDCIDV LNELQGVKLS IHDSWEKVFP
EAASFLNGSK QIDASDLPSD DSADNDYDPT LAQGHKVDEE KSSGEDGGEG LDSDDSSSED
SESSEKEKSK TSQNGRTVDD LGLPSEDSED GDFDPAGPDS DKEQNDESNS DQSDESDFTS
DSDDFCAEIA KSCGQDEISG PSSSQIRTVD RTDGSGFDGE PNAENSNLAF METELEQDMV
LPISSKRQVE RLDYKKLYNE AYGKASSDSS DDEEWYGNST PEKGNLEDSE TDSLAESPQG
GKGFSRRAPV RYHNNEHTPQ NVRPGGSVSD QQTEVLCSNS NGSTAKNRHF GPAINQKLKA
HFKEDPYPSR ATKENLAQEL GLTFNQVTKW FSSTRHYARV AATKKENNIE NHTAENNNNT
NTVDSIQLRG SNDIVSVDRN DMVSEERTGQ SNLNEGTPLR SDTSCGQSVA VTPMVHPENQ
GNDSSSNVRT PNAKSAEKLI PGLENSDEAR RKAVQRELRK MKTGR
//
