ID A0A0E0Q8V5_ORYRU Unreviewed; 803 AA.
AC A0A0E0Q8V5;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=DNA repair protein RAD16 {ECO:0008006|Google:ProtNLM};
OS Oryza rufipogon (Brownbeard rice) (Asian wild rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI07G16450.1, ECO:0000313|Proteomes:UP000008022};
RN [1] {ECO:0000313|Proteomes:UP000008022}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. W1943 {ECO:0000313|Proteomes:UP000008022};
RA Zhao Q.;
RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ORUFI07G16450.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR AlphaFoldDB; A0A0E0Q8V5; -.
DR STRING; 4529.A0A0E0Q8V5; -.
DR EnsemblPlants; ORUFI07G16450.1; ORUFI07G16450.1; ORUFI07G16450.
DR Gramene; ORUFI07G16450.1; ORUFI07G16450.1; ORUFI07G16450.
DR eggNOG; KOG1002; Eukaryota.
DR HOGENOM; CLU_000315_2_10_1; -.
DR OMA; YFCKQCD; -.
DR Proteomes; UP000008022; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF12; DNA REPAIR PROTEIN RAD16; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF13923; zf-C3HC4_2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000008022};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 171..438
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 577..617
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 660..803
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 330..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 22..59
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 350..367
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 803 AA; 89596 MW; 81C6FBAD94AFF7AB CRC64;
MPRRGASSAS TSRGRRRPRE EEEEEDEEEV VGDVASDDSA DSDFVADTEE EEAADDEYDY
ASDGKDGAGP AAAAAAAPAA VAPPPPQPKR LQGGRKKGAG GHGKLPLPWE EWEEANEKWL
DEREAAAKGE EPPDPEVPPA VAAGVPTAEP APEVLLPLLR FQKEWLAWAL AQEASPSRGG
ILADEMGMGK TIQGISLVIT ARRLRPPAPP PRRRAASSSQ GQPKRWVGCT LVVCPVVAVI
QWAQEIERHT AKDSVRVLVY HGGRRGAQKY DFNKYDFVIT TYSTIEADYR KHIMPPKTRC
CYCDKLFYPN KLKVHLRYYC GPDAQRTEKQ AKQESRKWGS KKGTSKRRVQ KKKNDSDGED
FEERDGGSGS QSRGQSPLHS VRWERIILDE AHFIKDRRCN TAKAIFALES EYKWALSGTP
LQNRVGELYS LIRFLQIFPY SNYFCKDCNC EILDTLFEGK RAMVLLKEKV LKGIVLRRTK
KGRAADLALP PKIVTLRRDS FDKNEMEFYE ALYTQSRTQF DSYVDAGTLM NNYAHIFDLL
TRLRQAVDHP YLVAFSKTAE LSDRSKNEGN ENMESQCGIC HDMTEDAVVT SCEHVFCKNC
LIDYSATLGN VSCPSCSVPL TVDLTTRSSG EKVTPNLKGG KRSGILSRLQ NLADFKTSTK
IDALREEIRN MVEHDGSAKG IVFSQFTSFL DLIEFSLQKS GIKCVQLNGK MNIVEKGKAI
DTFTNDPDCR IFLMSLKAGG VALNLTVASH VFLMDPWWNP AVESQAQDRI HRIGQFKPIS
TVGDSPEAMS KLTEADLKFL FQN
//
