ID   A0A0F0CJD2_9BACT        Unreviewed;       325 AA.
AC   A0A0F0CJD2;
DT   24-JUN-2015, integrated into UniProtKB/TrEMBL.
DT   24-JUN-2015, sequence version 1.
DT   27-MAR-2024, entry version 28.
DE   RecName: Full=RNA polymerase sigma factor {ECO:0000256|RuleBase:RU362124};
GN   ORFNames=OMAG_002710 {ECO:0000313|EMBL:KJJ83413.1};
OS   Candidatus Omnitrophus magneticus.
OC   Bacteria; Candidatus Omnitrophota; Omnitrophus.
OX   NCBI_TaxID=1609969 {ECO:0000313|EMBL:KJJ83413.1, ECO:0000313|Proteomes:UP000033428};
RN   [1] {ECO:0000313|EMBL:KJJ83413.1, ECO:0000313|Proteomes:UP000033428}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SKK-01 {ECO:0000313|EMBL:KJJ83413.1};
RA   Kolinko S., Richter M., Glockner F.O., Brachmann A., Schuler D.;
RT   "Single-cell genomics of uncultivated deep-branching MTB reveals a
RT   conserved set of magnetosome genes.";
RL   Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are then
CC       released. {ECO:0000256|RuleBase:RU362124}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|RuleBase:RU362124}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KJJ83413.1}.
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DR   EMBL; JYNY01000588; KJJ83413.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0F0CJD2; -.
DR   PATRIC; fig|1609969.3.peg.2885; -.
DR   Proteomes; UP000033428; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR   PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|RuleBase:RU362124};
KW   Reference proteome {ECO:0000313|Proteomes:UP000033428};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW   ECO:0000256|RuleBase:RU362124};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU362124};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW   ECO:0000256|RuleBase:RU362124}.
FT   DOMAIN          64..77
FT                   /note="RNA polymerase sigma-70"
FT                   /evidence="ECO:0000259|PROSITE:PS00715"
FT   DOMAIN          233..259
FT                   /note="RNA polymerase sigma-70"
FT                   /evidence="ECO:0000259|PROSITE:PS00716"
SQ   SEQUENCE   325 AA;  37868 MW;  7EAD739ED8DADFB7 CRC64;
     MESIKLYLRD IKTLPLLKAD EELALARKVI KGDLKARHEM IKSNLRLVIN IAKKYSYLGV
     PMLDLIEEGN MGLMKAVNKY DPEKGYRFST YAAWWIKQFI TRAVANQGKT VRVPVYVMEM
     LMRFQKIKKQ LTQSGKKIPQ LSDIADKLEL PLARVKQLNE MASNISSLNA PIGDDGSSEF
     MDLLEDESST DALTELNRFL LQERIKKLLD KMDERERRIL NLRFGFENGT MHTLRETAEY
     FGITRERVRQ IESHCMDKLR EKMEVQDAVA IKRFKDEYRK KAKKALRVEI KIIKKAPKSQ
     KVFTNGTKVK LKVVEKFSKK KYQKV
//