ID A0A0G1MJE4_9BACT Unreviewed; 505 AA.
AC A0A0G1MJE4;
DT 22-JUL-2015, integrated into UniProtKB/TrEMBL.
DT 22-JUL-2015, sequence version 1.
DT 13-SEP-2023, entry version 32.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN {ECO:0000313|EMBL:KKT72089.1};
GN ORFNames=UW63_C0001G0011 {ECO:0000313|EMBL:KKT72089.1};
OS Candidatus Uhrbacteria bacterium GW2011_GWF2_44_350.
OC Bacteria; Candidatus Uhrbacteria.
OX NCBI_TaxID=1619000 {ECO:0000313|EMBL:KKT72089.1, ECO:0000313|Proteomes:UP000034154};
RN [1] {ECO:0000313|EMBL:KKT72089.1, ECO:0000313|Proteomes:UP000034154}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Brown C.T., Hug L.A., Thomas B.C., Sharon I., Castelle C.J., Singh A.,
RA Wilkins M.J., Williams K.H., Banfield J.F.;
RT "rRNA introns, odd ribosomes, and small enigmatic genomes across a large
RT radiation of phyla.";
RL Nature 0:0-0(2015).
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KKT72089.1}.
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DR EMBL; LCJB01000001; KKT72089.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0G1MJE4; -.
DR PATRIC; fig|1619000.3.peg.13; -.
DR Proteomes; UP000034154; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 131..322
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 346..503
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 62..92
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 66..92
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 505 AA; 58341 MW; 12AD87CA7FD87547 CRC64;
MHPANPDFFI TFRTFLKKYY RMLKQSLQQK LLQKLSPQQI QLIKLLEIPT MQLEQRIKKE
LEENPALEEG PDEETAASQD DGQDEKEADG NQDEFSLEDY LNDEDVPSYK LSANNYSKDD
EQKDIPYSVG STFHEQLEVQ LGLRMLDELS KNLALYIIGN IDEDGYLRRD LEAIVDDLAF
SMNIQTDEQK LLGILRIIQD FDPAGVGARD LQECLLLQIE RRDKKTPHID VAEKILRRHF
DEFTKKHYDK IEKKLDIDDE ILKKAIDEIL KLNPKPGSSF SDPMNKSFQT ITPDFILDII
DGEMILTLNA KNVPDLKISR SYADMIQDFA KGKGKTIKQN KEAITFVKQK LDSAKWFIDA
IKQRQNTLLV TMNAIIGFQE EYFIEGDETK LKPMILKDVA DITGLDISTI SRVANSKYIQ
THFGIYSLKY FFSEGMQTDS GEEVSTREIK KILSECIENE NKKKPVTDEK LADILKEKGY
LIARRTVAKY REQLNIPVAR MRKEL
//
