ID A0A0G2JU15_RAT Unreviewed; 690 AA.
AC A0A0G2JU15;
DT 22-JUL-2015, integrated into UniProtKB/TrEMBL.
DT 25-MAY-2022, sequence version 2.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Small ribosomal subunit protein mS39 {ECO:0000256|ARBA:ARBA00035134};
GN Name=Ptcd3 {ECO:0000313|Ensembl:ENSRNOP00000068923.2,
GN ECO:0000313|RGD:1565582};
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Rattus.
OX NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000068923.2, ECO:0000313|Proteomes:UP000002494};
RN [1] {ECO:0000313|Ensembl:ENSRNOP00000068923.2, ECO:0000313|Proteomes:UP000002494}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000068923.2,
RC ECO:0000313|Proteomes:UP000002494};
RX PubMed=15057822; DOI=10.1038/nature02426;
RG Rat Genome Sequencing Project Consortium;
RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D.,
RA Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L.,
RA Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D.,
RA Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M.,
RA Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C.,
RA Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J.,
RA Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H.,
RA Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X.,
RA Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q.,
RA Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P.,
RA Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A.,
RA Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C.,
RA Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J.,
RA Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F.,
RA Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A.,
RA Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A.,
RA Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J.,
RA Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E.,
RA Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C.,
RA Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L.,
RA Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W.,
RA Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y.,
RA Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V.,
RA Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M.,
RA Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S.,
RA Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B.,
RA Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R.,
RA Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J.,
RA Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D.,
RA Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S.,
RA Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S.,
RA Mockrin S., Collins F.S.;
RT "Genome sequence of the Brown Norway rat yields insights into mammalian
RT evolution.";
RL Nature 428:493-521(2004).
RN [2] {ECO:0000313|Ensembl:ENSRNOP00000068923.2}
RP IDENTIFICATION.
RC STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000068923.2};
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000256|ARBA:ARBA00004173}.
CC -!- SIMILARITY: Belongs to the mitochondrion-specific ribosomal protein
CC mS39 family. {ECO:0000256|ARBA:ARBA00008551}.
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DR AlphaFoldDB; A0A0G2JU15; -.
DR STRING; 10116.ENSRNOP00000068923; -.
DR jPOST; A0A0G2JU15; -.
DR Ensembl; ENSRNOT00000078991.2; ENSRNOP00000068923.2; ENSRNOG00000009484.8.
DR AGR; RGD:1565582; -.
DR RGD; 1565582; Ptcd3.
DR GeneTree; ENSGT00390000016876; -.
DR InParanoid; A0A0G2JU15; -.
DR OrthoDB; 2966953at2759; -.
DR Reactome; R-RNO-5389840; Mitochondrial translation elongation.
DR Reactome; R-RNO-5419276; Mitochondrial translation termination.
DR Proteomes; UP000002494; Chromosome 4.
DR Bgee; ENSRNOG00000009484; Expressed in spleen and 18 other cell types or tissues.
DR ExpressionAtlas; A0A0G2JU15; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; ISO:RGD.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0043024; F:ribosomal small subunit binding; ISO:RGD.
DR GO; GO:0019843; F:rRNA binding; ISO:RGD.
DR GO; GO:0032543; P:mitochondrial translation; ISO:RGD.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR037387; PTCD3.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR16276; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3; 1.
DR PANTHER; PTHR16276:SF1; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR Pfam; PF13812; PPR_3; 1.
PE 1: Evidence at protein level;
KW Mitochondrion {ECO:0000256|ARBA:ARBA00023128};
KW Proteomics identification {ECO:0007829|PeptideAtlas:A0A0G2JU15};
KW Reference proteome {ECO:0000313|Proteomes:UP000002494};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730};
KW Translation regulation {ECO:0000256|ARBA:ARBA00022845}.
FT REGION 666..690
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 666..680
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 690 AA; 78334 MW; CAE696B9E8066535 CRC64;
MAAAAAARCL PFRSGLVLLR TTRETGVYEP KLCCRFYPGS ESLPKVEGTD ITGIFKTMEN
RIFLNEKTLD KVAVLQALAS TVTRDPTAAP YVFQDDPYLI PTSAMESRSF LLAKKSGETA
AKFIINSHPK YFQKDIAEPH IPCLMPEYLE PQIEGVSEAA LKERVKLKRV KASVDIFDQL
LQAGTTVSLE TTNSLLDLLC YYGDQEPPAD YPFQQTEHLE NLEEAAEENN QTPRMESGLW
KAQNNAERIF ALMPEKNARS YCTMIRGMVK HRAYAQALNL YTELLNNRLS ADVYTFNALI
EAKTFIPNEK FEEKWNDILD LLRHMVAQKV KPNLQTFNTT LKCLRKFHSL GRLPALQILR
EMKHIGIEPS LATYHHIIHL FYPRGSSIKI PSLIIYDIMN ELEGRTFSPQ DLDDDKFFQS
AMTVCSSLRD LELAYQLHGL LNTGDNRKLI GPDSQRKAYY SKFFSLICSL EQIDVTLKWY
KDLIPSVFLP HSQIFIGLLQ AVDVANRLEM VPQIWKDSKE YGHTFRGALR EEVLMLMARD
KHSPELQVAF ADCAADIKST YENQDARQTA LDWPANPLHY IAFLFLRGGR TQEAWKMLTL
FRKHNKIPRN ELLEEFMDTA KASSSTTLAI EVVRLASAFS LPISESLAQR VMMDFTVDPE
QKEALSNLTA LNSSDGESSS DSDSDISENK
//
