ID A0A0G2ZCB9_9BACT Unreviewed; 386 AA.
AC A0A0G2ZCB9;
DT 16-SEP-2015, integrated into UniProtKB/TrEMBL.
DT 16-SEP-2015, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=RNA polymerase subunit sigma-54 {ECO:0000313|EMBL:AKI97189.1};
GN ORFNames=IX53_04480 {ECO:0000313|EMBL:AKI97189.1};
OS Kosmotoga pacifica.
OC Bacteria; Thermotogota; Thermotogae; Kosmotogales; Kosmotogaceae;
OC Kosmotoga.
OX NCBI_TaxID=1330330 {ECO:0000313|EMBL:AKI97189.1, ECO:0000313|Proteomes:UP000035159};
RN [1] {ECO:0000313|EMBL:AKI97189.1, ECO:0000313|Proteomes:UP000035159}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SLHLJ1 {ECO:0000313|EMBL:AKI97189.1,
RC ECO:0000313|Proteomes:UP000035159};
RA Jiang L.J., Shao Z.Z., Jebbar M.;
RT "Complete Genome Sequence of Kosmotoga pacifica SLHLJ1.";
RL Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; CP011232; AKI97189.1; -; Genomic_DNA.
DR RefSeq; WP_047754323.1; NZ_CP011232.1.
DR AlphaFoldDB; A0A0G2ZCB9; -.
DR STRING; 1330330.IX53_04480; -.
DR KEGG; kpf:IX53_04480; -.
DR PATRIC; fig|1330330.3.peg.900; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000035159; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 2.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 102..176
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 243..380
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT COILED 46..73
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 386 AA; 45175 MW; A5502390EE18179A CRC64;
MRLNHELSQR LEQKLGLSLK VQQALKLLQL NHLELKAELS ELIEGNPLLE LERDEYELLL
DEIEEEEEDY YDSGTDYNIY MRETREDFQG WDFDRLEGPQ PSFEEILSEL AYYLLEDEEL
RAFEALLENT DSRGILQKKL LEISNEYNLS PEVLKKVIDQ IRDAGFEGLF AESLEEMREL
RGDEIFPTSG YEDGNPTRYI EPEIYIDFID GRFIVNVRDC GLALKVDDIY ERYLQEEKSD
ASKYLNEKLQ EAHFYINALE KRRTILLNIG RELIRKNSAF LLGRTKRLTP LKMTEIAEKN
EVVVSTVSRA VKGKYVQTPV GTFPLRYFFG SVQTRQNAME IMAELLKEKP DLSDSKIARI
LQQKGIKIAR RTVNKYRRIL FSGDVR
//
