ID A0A0G4JUM5_9GAMM Unreviewed; 239 AA.
AC A0A0G4JUM5;
DT 16-SEP-2015, integrated into UniProtKB/TrEMBL.
DT 16-SEP-2015, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE RecName: Full=Phosphoglycolate phosphatase {ECO:0000256|ARBA:ARBA00013078, ECO:0000256|HAMAP-Rule:MF_00495};
DE Short=PGP {ECO:0000256|HAMAP-Rule:MF_00495};
DE Short=PGPase {ECO:0000256|HAMAP-Rule:MF_00495};
DE EC=3.1.3.18 {ECO:0000256|ARBA:ARBA00013078, ECO:0000256|HAMAP-Rule:MF_00495};
GN ORFNames=BN1221_02047 {ECO:0000313|EMBL:CPR16391.1};
OS Brenneria goodwinii.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Pectobacteriaceae; Brenneria.
OX NCBI_TaxID=1109412 {ECO:0000313|EMBL:CPR16391.1, ECO:0000313|Proteomes:UP000044377};
RN [1] {ECO:0000313|Proteomes:UP000044377}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=OBR1 {ECO:0000313|Proteomes:UP000044377};
RA Paterson Steve;
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Specifically catalyzes the dephosphorylation of 2-
CC phosphoglycolate. Is involved in the dissimilation of the intracellular
CC 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate
CC ends, a major class of DNA lesions induced by oxidative stress.
CC {ECO:0000256|HAMAP-Rule:MF_00495}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=2-phosphoglycolate + H2O = glycolate + phosphate;
CC Xref=Rhea:RHEA:14369, ChEBI:CHEBI:15377, ChEBI:CHEBI:29805,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:58033; EC=3.1.3.18;
CC Evidence={ECO:0000256|ARBA:ARBA00000830, ECO:0000256|HAMAP-
CC Rule:MF_00495};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946,
CC ECO:0000256|HAMAP-Rule:MF_00495};
CC -!- COFACTOR:
CC Name=chloride; Xref=ChEBI:CHEBI:17996;
CC Evidence={ECO:0000256|HAMAP-Rule:MF_00495};
CC -!- PATHWAY: Organic acid metabolism; glycolate biosynthesis; glycolate
CC from 2-phosphoglycolate: step 1/1. {ECO:0000256|ARBA:ARBA00004818,
CC ECO:0000256|HAMAP-Rule:MF_00495}.
CC -!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_00495}.
CC -!- SIMILARITY: Belongs to the HAD-like hydrolase superfamily.
CC CbbY/CbbZ/Gph/YieH family. {ECO:0000256|ARBA:ARBA00006171,
CC ECO:0000256|HAMAP-Rule:MF_00495}.
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DR EMBL; CGIG01000001; CPR16391.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0G4JUM5; -.
DR STRING; 1109412.BN1221_02047; -.
DR UniPathway; UPA00865; UER00834.
DR Proteomes; UP000044377; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0008967; F:phosphoglycolate phosphatase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-UniRule.
DR GO; GO:0046295; P:glycolate biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16417; HAD_PGPase; 1.
DR Gene3D; 3.40.50.1000; HAD superfamily/HAD-like; 1.
DR HAMAP; MF_00495; GPH_hydrolase_bact; 1.
DR InterPro; IPR036412; HAD-like_sf.
DR InterPro; IPR006439; HAD-SF_hydro_IA.
DR InterPro; IPR041492; HAD_2.
DR InterPro; IPR023214; HAD_sf.
DR InterPro; IPR023198; PGP-like_dom2.
DR InterPro; IPR037512; PGPase_prok.
DR NCBIfam; TIGR01549; HAD-SF-IA-v1; 1.
DR NCBIfam; TIGR01509; HAD-SF-IA-v3; 1.
DR NCBIfam; TIGR01449; PGP_bact; 1.
DR PANTHER; PTHR43434; PHOSPHOGLYCOLATE PHOSPHATASE; 1.
DR PANTHER; PTHR43434:SF15; PHOSPHOGLYCOLATE PHOSPHATASE; 1.
DR Pfam; PF13419; HAD_2; 1.
DR PRINTS; PR00413; HADHALOGNASE.
DR SFLD; SFLDG01135; C1.5.6:_HAD__Beta-PGM__Phospha; 1.
DR SFLD; SFLDG01129; C1.5:_HAD__Beta-PGM__Phosphata; 1.
DR SUPFAM; SSF56784; HAD-like; 1.
PE 3: Inferred from homology;
KW Carbohydrate metabolism {ECO:0000256|ARBA:ARBA00023277, ECO:0000256|HAMAP-
KW Rule:MF_00495};
KW Chloride {ECO:0000256|ARBA:ARBA00023214, ECO:0000256|HAMAP-Rule:MF_00495};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00495};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842, ECO:0000256|HAMAP-Rule:MF_00495};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW Rule:MF_00495}; Reference proteome {ECO:0000313|Proteomes:UP000044377}.
FT ACT_SITE 18
FT /note="Nucleophile"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00495"
FT BINDING 18
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00495"
FT BINDING 20
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00495"
FT BINDING 180
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00495"
SQ SEQUENCE 239 AA; 25484 MW; 4150D1EBF93FEEBC CRC64;
MNNSALIKTM PIRGVAFDLD GTLINSAPGL AAAIDLALRA QSLPAAGEER VATWIGNGAD
VLVERALRWA GVEPTPQRIR DTRETFDRYY EQTVDNGSTL YPQVKETLAH LAGQGLPMAI
VTNKPTPFVA PLLASLGIDA YFSLIIGGDD VIAKKPHPAP LYLVLGKLGL RAGELLFVGD
SRNDIQASQA AGCPCVGMTY GYNYGEAIEL SHPDITLDRF ADLLPIVGPS SSKNQEALV
//
