ID A0A0H3XJK1_9MOLU Unreviewed; 181 AA.
AC A0A0H3XJK1;
DT 14-OCT-2015, integrated into UniProtKB/TrEMBL.
DT 14-OCT-2015, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE RecName: Full=Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469};
DE EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};
DE AltName: Full=RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469};
DE AltName: Full=Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469};
GN Name=rnmV {ECO:0000256|HAMAP-Rule:MF_01469};
GN ORFNames=SERIO_v1c12210 {ECO:0000313|EMBL:AKM54770.1};
OS Spiroplasma eriocheiris.
OC Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae;
OC Spiroplasma.
OX NCBI_TaxID=315358 {ECO:0000313|EMBL:AKM54770.1, ECO:0000313|Proteomes:UP000035661};
RN [1] {ECO:0000313|EMBL:AKM54770.1, ECO:0000313|Proteomes:UP000035661}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TDA-040725-5 {ECO:0000313|Proteomes:UP000035661};
RX PubMed=26254485; DOI=10.1093/gbe/evv160;
RA Lo W.S., Gasparich G.E., Kuo C.H.;
RT "Found and Lost: The Fates of Horizontally Acquired Genes in Arthropod-
RT Symbiotic Spiroplasma.";
RL Genome Biol. Evol. 7:2458-2472(2015).
RN [2] {ECO:0000313|Proteomes:UP000035661}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TDA-040725-5 {ECO:0000313|Proteomes:UP000035661};
RA Lo W.-S., Kuo C.-H.;
RT "Complete genome sequence of Spiroplasma eriocheiris TDA-040725-5 (DSM
RT 21848).";
RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Required for correct processing of both the 5' and 3' ends of
CC 5S rRNA precursor. Cleaves both sides of a double-stranded region
CC yielding mature 5S rRNA in one step. {ECO:0000256|HAMAP-Rule:MF_01469}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Endonucleolytic cleavage of RNA, removing 21 and 42
CC nucleotides, respectively, from the 5'- and 3'-termini of a 5S-rRNA
CC precursor.; EC=3.1.26.8; Evidence={ECO:0000256|HAMAP-Rule:MF_01469};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01469}.
CC -!- SIMILARITY: Belongs to the ribonuclease M5 family. {ECO:0000256|HAMAP-
CC Rule:MF_01469}.
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DR EMBL; CP011856; AKM54770.1; -; Genomic_DNA.
DR RefSeq; WP_047791948.1; NZ_CP011856.1.
DR AlphaFoldDB; A0A0H3XJK1; -.
DR STRING; 315358.SERIO_v1c12210; -.
DR KEGG; seri:SERIO_v1c12210; -.
DR PATRIC; fig|743698.3.peg.1233; -.
DR Proteomes; UP000035661; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0043822; F:ribonuclease M5 activity; IEA:UniProtKB-UniRule.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR CDD; cd01027; TOPRIM_RNase_M5_like; 1.
DR Gene3D; 3.40.1360.10; -; 1.
DR HAMAP; MF_01469; RNase_M5; 1.
DR InterPro; IPR004466; RNase_M5.
DR InterPro; IPR025156; RNase_M5_C.
DR InterPro; IPR006171; TOPRIM_domain.
DR InterPro; IPR034141; TOPRIM_RNase_M5-like.
DR NCBIfam; TIGR00334; 5S_RNA_mat_M5; 1.
DR PANTHER; PTHR39156:SF2; DNA PRIMASE (BACTERIAL TYPE) AND SMALL PRIMASE-LIKE PROTEINS; 1.
DR PANTHER; PTHR39156; RIBONUCLEASE M5; 1.
DR Pfam; PF13331; DUF4093; 1.
DR Pfam; PF01751; Toprim; 1.
DR SMART; SM00493; TOPRIM; 1.
DR SUPFAM; SSF110455; Toprim domain; 1.
DR PROSITE; PS50880; TOPRIM; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_01469};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_01469};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_01469};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_01469};
KW Reference proteome {ECO:0000313|Proteomes:UP000035661};
KW Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW Rule:MF_01469};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01469};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552, ECO:0000256|HAMAP-
KW Rule:MF_01469};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01469}.
FT DOMAIN 4..96
FT /note="Toprim"
FT /evidence="ECO:0000259|PROSITE:PS50880"
SQ SEQUENCE 181 AA; 20609 MW; B1AD9914820A3F17 CRC64;
MWDNIIIIVE GKTDTNKIQS IYPNLTCVET NGSAIDGSIL QRIKQLSLTH QIIIFTDPDY
PGQKIRQIVS DYLDNKCSHA FIDKNLAIKN NKVGIAQAVP ETIKKALASV VHFNSNQEPS
LSWHDYIILV DSKPKRDYLS QNLHFTKVNN KTLYKWLNLM GVNKTKVQEI LKEQINDGTT
K
//
