ID A0A0J1I9S9_9FIRM Unreviewed; 578 AA.
AC A0A0J1I9S9;
DT 14-OCT-2015, integrated into UniProtKB/TrEMBL.
DT 14-OCT-2015, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE SubName: Full=Arginine utilization regulatory protein RocR {ECO:0000313|EMBL:KLU61381.1};
GN Name=rocR_2 {ECO:0000313|EMBL:KLU61381.1};
GN ORFNames=CEB3_c23220 {ECO:0000313|EMBL:KLU61381.1};
OS Peptococcaceae bacterium CEB3.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Peptococcaceae.
OX NCBI_TaxID=999898 {ECO:0000313|EMBL:KLU61381.1, ECO:0000313|Proteomes:UP000035957};
RN [1] {ECO:0000313|EMBL:KLU61381.1, ECO:0000313|Proteomes:UP000035957}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CEB3 {ECO:0000313|EMBL:KLU61381.1,
RC ECO:0000313|Proteomes:UP000035957};
RA Poehlein A., Petzsch P., Johnson B.D., Schloemann M., Daniel R.,
RA Muehling M.;
RT "Genome sequence of the moderately acidophilic sulfate reducing
RT Peptococcaceae bacterium strain CEB3.";
RL Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KLU61381.1}.
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DR EMBL; LDXJ01000055; KLU61381.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0J1I9S9; -.
DR STRING; 999898.CEB3_c23220; -.
DR PATRIC; fig|999898.3.peg.2595; -.
DR OrthoDB; 9765164at2; -.
DR Proteomes; UP000035957; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000035957};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 3..47
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 121..166
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 256..486
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT REGION 501..529
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 578 AA; 62963 MW; 14E2A0EB8DD48F71 CRC64;
MLTRLQVERL AREGDNAVIA IDGRGKIAVF NEAAAKLLGI TKDEALGLAY GQVLPDIPLS
EVRQRQVPSF NLMTRIGGKQ VVVSSVPYRS LSGRVGGVAA FIRNMDEFES LSAQVNNLRE
AGNLLTAIIN STQDAISVAD EDGVGILVNP AYTRLTGLTA EDVLGKPPTV DMAEGGESMH
MKVLRTGKAV KGISMKVGPK RKEVIVNVAP ILAQGRLLGS VGVLQDVSEI RKLSDELEGA
KRIIRHLEAK YTFTDIIGES EAIRATVEQA QRAAATPATV LLRGESGTGK ELFAHAIHRL
SSRPKGQFIR VNCAALSDSL LESELFGYVE GAFTGAKRGG KVGLFEEANG GTIFLDEIGE
ISLNLQTKLL RVLQEREIVR VGANQPVSVD VRVIAATNAN LEEALRLGKF REDLYYRLNV
IPVLIPPLRQ RRADMPLLVH HLIRRFNQEY GRGVEKVTDE ALEVLSRYQW PGNVRELENV
LGRAIINMRV GDTVMEAGYL PPLDGRQGGG GQAGNGASNP AAGGRPDESS YAELQFSWEE
EVLRRALREA GGNKTQAARN LKISIRNFYY KLRRHGLA
//