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Database: UniProt
Entry: A0A0J1I9S9_9FIRM
LinkDB: A0A0J1I9S9_9FIRM
Original site: A0A0J1I9S9_9FIRM 
ID   A0A0J1I9S9_9FIRM        Unreviewed;       578 AA.
AC   A0A0J1I9S9;
DT   14-OCT-2015, integrated into UniProtKB/TrEMBL.
DT   14-OCT-2015, sequence version 1.
DT   24-JAN-2024, entry version 38.
DE   SubName: Full=Arginine utilization regulatory protein RocR {ECO:0000313|EMBL:KLU61381.1};
GN   Name=rocR_2 {ECO:0000313|EMBL:KLU61381.1};
GN   ORFNames=CEB3_c23220 {ECO:0000313|EMBL:KLU61381.1};
OS   Peptococcaceae bacterium CEB3.
OC   Bacteria; Bacillota; Clostridia; Eubacteriales; Peptococcaceae.
OX   NCBI_TaxID=999898 {ECO:0000313|EMBL:KLU61381.1, ECO:0000313|Proteomes:UP000035957};
RN   [1] {ECO:0000313|EMBL:KLU61381.1, ECO:0000313|Proteomes:UP000035957}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CEB3 {ECO:0000313|EMBL:KLU61381.1,
RC   ECO:0000313|Proteomes:UP000035957};
RA   Poehlein A., Petzsch P., Johnson B.D., Schloemann M., Daniel R.,
RA   Muehling M.;
RT   "Genome sequence of the moderately acidophilic sulfate reducing
RT   Peptococcaceae bacterium strain CEB3.";
RL   Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KLU61381.1}.
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DR   EMBL; LDXJ01000055; KLU61381.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0J1I9S9; -.
DR   STRING; 999898.CEB3_c23220; -.
DR   PATRIC; fig|999898.3.peg.2595; -.
DR   OrthoDB; 9765164at2; -.
DR   Proteomes; UP000035957; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd00130; PAS; 2.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 2.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   NCBIfam; TIGR00229; sensory_box; 1.
DR   PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 2.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR   PROSITE; PS50112; PAS; 2.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000035957};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          3..47
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          121..166
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          256..486
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
FT   REGION          501..529
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   578 AA;  62963 MW;  14E2A0EB8DD48F71 CRC64;
     MLTRLQVERL AREGDNAVIA IDGRGKIAVF NEAAAKLLGI TKDEALGLAY GQVLPDIPLS
     EVRQRQVPSF NLMTRIGGKQ VVVSSVPYRS LSGRVGGVAA FIRNMDEFES LSAQVNNLRE
     AGNLLTAIIN STQDAISVAD EDGVGILVNP AYTRLTGLTA EDVLGKPPTV DMAEGGESMH
     MKVLRTGKAV KGISMKVGPK RKEVIVNVAP ILAQGRLLGS VGVLQDVSEI RKLSDELEGA
     KRIIRHLEAK YTFTDIIGES EAIRATVEQA QRAAATPATV LLRGESGTGK ELFAHAIHRL
     SSRPKGQFIR VNCAALSDSL LESELFGYVE GAFTGAKRGG KVGLFEEANG GTIFLDEIGE
     ISLNLQTKLL RVLQEREIVR VGANQPVSVD VRVIAATNAN LEEALRLGKF REDLYYRLNV
     IPVLIPPLRQ RRADMPLLVH HLIRRFNQEY GRGVEKVTDE ALEVLSRYQW PGNVRELENV
     LGRAIINMRV GDTVMEAGYL PPLDGRQGGG GQAGNGASNP AAGGRPDESS YAELQFSWEE
     EVLRRALREA GGNKTQAARN LKISIRNFYY KLRRHGLA
//
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