ID A0A0K9PL21_ZOSMR Unreviewed; 453 AA.
AC A0A0K9PL21;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE SubName: Full=Polypyrimidine tract-binding protein-like {ECO:0000313|EMBL:KMZ69634.1};
GN ORFNames=ZOSMA_20G01120 {ECO:0000313|EMBL:KMZ69634.1};
OS Zostera marina (Eelgrass).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Zosteraceae; Zostera.
OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ69634.1, ECO:0000313|Proteomes:UP000036987};
RN [1] {ECO:0000313|Proteomes:UP000036987}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Finnish {ECO:0000313|Proteomes:UP000036987};
RX PubMed=26814964; DOI=10.1038/nature16548;
RA Olsen J.L., Rouze P., Verhelst B., Lin Y.-C., Bayer T., Collen J.,
RA Dattolo E., De Paoli E., Dittami S., Maumus F., Michel G., Kersting A.,
RA Lauritano C., Lohaus R., Toepel M., Tonon T., Vanneste K., Amirebrahimi M.,
RA Brakel J., Bostroem C., Chovatia M., Grimwood J., Jenkins J.W.,
RA Jueterbock A., Mraz A., Stam W.T., Tice H., Bornberg-Bauer E., Green P.J.,
RA Pearson G.A., Procaccini G., Duarte C.M., Schmutz J., Reusch T.B.H.,
RA Van de Peer Y.;
RT "The genome of the seagrass Zostera marina reveals angiosperm adaptation to
RT the sea.";
RL Nature 530:331-335(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KMZ69634.1}.
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DR EMBL; LFYR01000757; KMZ69634.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0K9PL21; -.
DR STRING; 29655.A0A0K9PL21; -.
DR OMA; SWDPAMQ; -.
DR OrthoDB; 4825346at2759; -.
DR Proteomes; UP000036987; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0043484; P:regulation of RNA splicing; IBA:GO_Central.
DR CDD; cd12686; RRM1_PTBPH1_PTBPH2; 1.
DR CDD; cd12691; RRM2_PTBPH1_PTBPH2; 1.
DR CDD; cd12690; RRM3_PTBPH1_PTBPH2; 1.
DR Gene3D; 3.30.70.330; -; 3.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR021790; PTBP1-like_RRM2.
DR InterPro; IPR034792; PTBPH1/PTBPH2_RRM1.
DR InterPro; IPR034793; PTBPH1/PTBPH2_RRM2.
DR InterPro; IPR034794; PTBPH1/PTBPH2_RRM3.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR PANTHER; PTHR15592:SF14; POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 1; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF13893; RRM_5; 1.
DR Pfam; PF11835; RRM_8; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000036987};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 18..96
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 397..453
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 402..418
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 428..453
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 453 AA; 49192 MW; FC6279F6FC5A931A CRC64;
MSFSSGQPQF RYTQTPSKVL HLRNLPWECT EEELVELCKP FGRIVNTKCN VGANRNQAFV
EFSDQNQAIA MVSYCASSSE PPQVRGKSVY IQYSNRQEIV NNKSTGDISG NVLLVTIEGV
EAGDVSIDVI HLVFSAFGYV HKIATFEKTA GFQALIQFTD ADTASAARNA LDGRSIPRYL
LPEHIGSCYL RINYSAHTDL NIKFQSHRSR DYTNPHLPVN PSAIEGVTQP IVGPDGKKKE
SESNVLLASI ENPQYAVTAD VFHTVFSAFG AVQKIAIFDK NGGLQALIQY PDVATATVAK
EALEGHCIYD GGYCKLHLSY SRHNDLIVKG NSDRSRDYTI PATGILQPQQ APGMPQQTVG
WQNNLPAGMG YAGAQAGSQA PPPLHNGQMP VWDPNMQAGR SFGAPNAYSG QTSAPQYIHP
PTGYPGNSSF GRPPNISSSS SSSIGQPPVY YSR
//
