ID A0A0L0DUJ8_THETB Unreviewed; 1056 AA.
AC A0A0L0DUJ8;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE RecName: Full=RNA polymerase II assembly factor Rtp1 C-terminal domain-containing protein {ECO:0000259|Pfam:PF10363};
GN ORFNames=AMSG_11322 {ECO:0000313|EMBL:KNC55872.1};
OS Thecamonas trahens ATCC 50062.
OC Eukaryota; Apusozoa; Apusomonadida; Apusomonadidae; Thecamonas.
OX NCBI_TaxID=461836 {ECO:0000313|EMBL:KNC55872.1, ECO:0000313|Proteomes:UP000054408};
RN [1] {ECO:0000313|EMBL:KNC55872.1, ECO:0000313|Proteomes:UP000054408}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 50062 {ECO:0000313|EMBL:KNC55872.1,
RC ECO:0000313|Proteomes:UP000054408};
RG The Broad Institute Genome Sequencing Platform;
RA Russ C., Cuomo C., Shea T., Young S.K., Zeng Q., Koehrsen M., Haas B.,
RA Borodovsky M., Guigo R., Alvarado L., Berlin A., Bochicchio J.,
RA Borenstein D., Chapman S., Chen Z., Freedman E., Gellesch M., Goldberg J.,
RA Griggs A., Gujja S., Heilman E., Heiman D., Hepburn T., Howarth C., Jen D.,
RA Larson L., Mehta T., Park D., Pearson M., Roberts A., Saif S., Shenoy N.,
RA Sisk P., Stolte C., Sykes S., Thomson T., Walk T., White J., Yandava C.,
RA Burger G., Gray M.W., Holland P.W.H., King N., Lang F.B.F., Roger A.J.,
RA Ruiz-Trillo I., Lander E., Nusbaum C.;
RT "The Genome Sequence of Thecamonas trahens ATCC 50062.";
RL Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the Tango6 family.
CC {ECO:0000256|ARBA:ARBA00005724}.
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DR EMBL; GL349507; KNC55872.1; -; Genomic_DNA.
DR RefSeq; XP_013752794.1; XM_013897340.1.
DR AlphaFoldDB; A0A0L0DUJ8; -.
DR EnsemblProtists; KNC55872; KNC55872; AMSG_11322.
DR GeneID; 25569324; -.
DR eggNOG; KOG4653; Eukaryota.
DR OrthoDB; 7790at2759; -.
DR Proteomes; UP000054408; Unassembled WGS sequence.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR019451; Rtp1_C1.
DR InterPro; IPR039600; TANGO6/Rtp1.
DR PANTHER; PTHR20959; TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER; 1.
DR PANTHER; PTHR20959:SF1; TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 HOMOLOG; 1.
DR Pfam; PF10363; RTP1_C1; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000054408}.
FT DOMAIN 804..909
FT /note="RNA polymerase II assembly factor Rtp1 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF10363"
SQ SEQUENCE 1056 AA; 110809 MW; C418C08BCFDB6847 CRC64;
MSNGLRRVMA VLEALGGTVE VDEVLEEASK RYEEEFGHVV LPSQLTGCGG RTKVVFVALD
ALAVLADELG PGLATLDEVA LSDKAKIRTV VEMVVLWGIA VHLLPGVGMP PQARSSALAS
LANAPSFSRS SLAVVTYSPS ELFVVLERLV GLGGFGSDAM PELTVENTNE ILISLLAQHA
VDLVAGYLQL AHAPAAASAA LAASATATAS FTSPGAIGAA AVAAAAAATP DTALSVQDAA
RAEARAHWLL ASVQPDVALE VGMILLGSRM RRSPRWLVPI ARRVLSDALL ARGGVHALLC
QMLDRGDESD YDAATVGRAV RHLSRVPSTV PRATYLARVG VQLLGILASA VASARDGKIE
SPAVTRAAVL TVHMLLAAHP VAMKEHFLRP LFAPFFPLFA APDEAESLLA VPCEAEAYGS
EPPEAGDGLQ VDDAVREVVP AWRVAHLVGI LHLVTASATP LPARAAEALA FGVPLVFALL
VTATATKSFM RARIVSTLAG LARCNEATVS DAFLQLITAP NVPGLSAQVG RTVSWFAPAD
GGALEVRALS LDTPGLSFER FAELVPARSI EGEAQVLLDL LKVLPRDCGL PSALFFGLLD
AFAGVRAEQT TEAGARDAAI AAQLEAELEA KLEAASQSRV RVRAEEAPAP SVGQMEAAAR
AELLREQRMR VLHMLAVLAD ELPIAALIGS DVDKMLRLAL ALLKSEAEET LGLVLQLVEY
VVTGRVAMTS QAEAVTLEAL APELERLSKA SGVVAAIRES ATRLRVLIVS RDPAWARTAT
AGSSEGEVDE QGVGGRGRVS ARLRDALKAL SDPLLPVRAA GLVQLRKIVQ GGLSAGHLGE
VKRIFESQLS DDDSFVFMAA VEGLAAVVDA APSLFLDDLI RAYGSASQSE QHRLKLGEAL
LRVALMAGDL LPEHAPRMVR AFLAQAGDEN EQVRASALSN LATLAGASPV PAAVRRCLEE
LVVGVSALLL RDESTSVRRA AAFVSVLLIE GLGLEATQVG SVMRDVRHAL TVAARDDADE
VVRGHAERGL ERLRSVVREA VVGSRSSGRQ HFLEIL
//
