ID A0A0L9V9P4_PHAAN Unreviewed; 687 AA.
AC A0A0L9V9P4;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:KAG2400764.1};
GN ORFNames=HKW66_Vig0093820 {ECO:0000313|EMBL:KAG2400764.1},
GN LR48_Vigan09g037700 {ECO:0000313|EMBL:KOM51718.1};
OS Phaseolus angularis (Azuki bean) (Vigna angularis).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna.
OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM51718.1, ECO:0000313|Proteomes:UP000053144};
RN [1] {ECO:0000313|Proteomes:UP000053144}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144};
RX PubMed=26460024; DOI=10.1073/pnas.1420949112;
RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., Sun Y.,
RA Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., Ma Y., Wu B.,
RA Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., Li Y., Wang J.,
RA Varshney R.K., Wang J., Ling H.Q., Wan P.;
RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight into
RT high starch and low fat accumulation and domestication.";
RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015).
RN [2] {ECO:0000313|EMBL:KOM51718.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:KOM51718.1};
RA Chooi Y.-H.;
RL Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:KAG2400764.1, ECO:0000313|Proteomes:UP000743370}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Leaf {ECO:0000313|EMBL:KAG2400764.1};
RA Xiang H.;
RT "Vigna angularis (adzuki bean) Var. LongXiaoDou No. 4 denovo assembly.";
RL Submitted (MAY-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; JABFOF010000004; KAG2400764.1; -; Genomic_DNA.
DR EMBL; CM003379; KOM51718.1; -; Genomic_DNA.
DR RefSeq; XP_017434488.1; XM_017578999.1.
DR AlphaFoldDB; A0A0L9V9P4; -.
DR STRING; 3914.A0A0L9V9P4; -.
DR EnsemblPlants; KOM51718; KOM51718; LR48_Vigan09g037700.
DR GeneID; 108341303; -.
DR Gramene; KOM51718; KOM51718; LR48_Vigan09g037700.
DR KEGG; var:108341303; -.
DR OMA; HAMTTFD; -.
DR OrthoDB; 406802at2759; -.
DR Proteomes; UP000053144; Chromosome 9.
DR Proteomes; UP000743370; Unassembled WGS sequence.
DR GO; GO:0042644; C:chloroplast nucleoid; IEA:EnsemblPlants.
DR GO; GO:0042651; C:thylakoid membrane; IEA:EnsemblPlants.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0003727; F:single-stranded RNA binding; IEA:EnsemblPlants.
DR GO; GO:0010239; P:chloroplast mRNA processing; IEA:EnsemblPlants.
DR GO; GO:0009658; P:chloroplast organization; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 12.
DR PANTHER; PTHR46128; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1; 1.
DR PANTHER; PTHR46128:SF348; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 5.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 13.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000053144};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 175..209
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 247..281
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 282..316
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 317..351
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 352..386
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 387..421
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 422..456
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 457..491
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 492..526
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 527..561
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 562..596
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 597..631
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 632..666
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 687 AA; 77422 MW; 261F402A21B02566 CRC64;
MLVFPPQLTN PFPSLHVTHL STHRYHHHHH ALPPPHSAAN SITFSPPKPV IVEEGPDDVL
SFHNRRYDFT PLLHFLSNSD PNSDSDSAPP TSLDSTEFQL AESYRAVPAP LWHALLKSLC
ASPSSINLAY GVVSWLQKHN LCFSYELLYS ILINALGRTE KLYEAFLLSQ RQTLTPLTYN
ALIGACARNG DIDKALNLMS KMRRDGYQPD FVNYSSIIQY LTRSNRVDSP FLQKLYSEIE
SDKIEMDGHL MNDIILGFSK AGDPTRALRF LAMAQSNGLN PKPSTLAAVI LALGNSGRTQ
EAEALFEEIR ENGLEPRTRA YNALLKGYVK TGSLKDAEFV VSEMEKAGVM PDEQTYSLLV
DAYAQAGRWE SARIVLKEME ASNVQPNSFV YSRILAGYRD KGQWQKSFQV LKDMKSCGVK
PDRHFYNVMI DTFGKYNCLD HAMATFERML LEGIQPDTVT WNTLIDCHCK SGRHDKAEEL
FQEMQRRGFS PCITTYNIMI NCMGEQQRWE QVSEFLSKMQ CQGLLPNSIT YTTLVDVYGK
SGRFSDAIEC LEVLKSTGFK PTSAMYNALI NAYAQKGLSE LAVNSFRLMT TEGLTPSLLA
LNSLINAFGE DRRDAEAFAV LQYMKENNIE PDVVTYTTLM KALIRCEKFQ KVPGVYEEMV
TSGCAPDRKA RAMLRSALRY MKQTLKS
//