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Database: UniProt
Entry: A0A0L9V9P4_PHAAN
LinkDB: A0A0L9V9P4_PHAAN
Original site: A0A0L9V9P4_PHAAN 
ID   A0A0L9V9P4_PHAAN        Unreviewed;       687 AA.
AC   A0A0L9V9P4;
DT   11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT   11-NOV-2015, sequence version 1.
DT   24-JAN-2024, entry version 38.
DE   SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:KAG2400764.1};
GN   ORFNames=HKW66_Vig0093820 {ECO:0000313|EMBL:KAG2400764.1},
GN   LR48_Vigan09g037700 {ECO:0000313|EMBL:KOM51718.1};
OS   Phaseolus angularis (Azuki bean) (Vigna angularis).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna.
OX   NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM51718.1, ECO:0000313|Proteomes:UP000053144};
RN   [1] {ECO:0000313|Proteomes:UP000053144}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144};
RX   PubMed=26460024; DOI=10.1073/pnas.1420949112;
RA   Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., Sun Y.,
RA   Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., Ma Y., Wu B.,
RA   Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., Li Y., Wang J.,
RA   Varshney R.K., Wang J., Ling H.Q., Wan P.;
RT   "Genome sequencing of adzuki bean (Vigna angularis) provides insight into
RT   high starch and low fat accumulation and domestication.";
RL   Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015).
RN   [2] {ECO:0000313|EMBL:KOM51718.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Seedling {ECO:0000313|EMBL:KOM51718.1};
RA   Chooi Y.-H.;
RL   Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:KAG2400764.1, ECO:0000313|Proteomes:UP000743370}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   TISSUE=Leaf {ECO:0000313|EMBL:KAG2400764.1};
RA   Xiang H.;
RT   "Vigna angularis (adzuki bean) Var. LongXiaoDou No. 4 denovo assembly.";
RL   Submitted (MAY-2020) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
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DR   EMBL; JABFOF010000004; KAG2400764.1; -; Genomic_DNA.
DR   EMBL; CM003379; KOM51718.1; -; Genomic_DNA.
DR   RefSeq; XP_017434488.1; XM_017578999.1.
DR   AlphaFoldDB; A0A0L9V9P4; -.
DR   STRING; 3914.A0A0L9V9P4; -.
DR   EnsemblPlants; KOM51718; KOM51718; LR48_Vigan09g037700.
DR   GeneID; 108341303; -.
DR   Gramene; KOM51718; KOM51718; LR48_Vigan09g037700.
DR   KEGG; var:108341303; -.
DR   OMA; HAMTTFD; -.
DR   OrthoDB; 406802at2759; -.
DR   Proteomes; UP000053144; Chromosome 9.
DR   Proteomes; UP000743370; Unassembled WGS sequence.
DR   GO; GO:0042644; C:chloroplast nucleoid; IEA:EnsemblPlants.
DR   GO; GO:0042651; C:thylakoid membrane; IEA:EnsemblPlants.
DR   GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR   GO; GO:0003727; F:single-stranded RNA binding; IEA:EnsemblPlants.
DR   GO; GO:0010239; P:chloroplast mRNA processing; IEA:EnsemblPlants.
DR   GO; GO:0009658; P:chloroplast organization; IEA:EnsemblPlants.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 12.
DR   PANTHER; PTHR46128; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1; 1.
DR   PANTHER; PTHR46128:SF348; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 5.
DR   Pfam; PF13812; PPR_3; 1.
DR   SUPFAM; SSF81901; HCP-like; 1.
DR   PROSITE; PS51375; PPR; 13.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000053144};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          175..209
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          247..281
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          282..316
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          317..351
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          352..386
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          387..421
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          422..456
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          457..491
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          492..526
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          527..561
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          562..596
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          597..631
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          632..666
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   687 AA;  77422 MW;  261F402A21B02566 CRC64;
     MLVFPPQLTN PFPSLHVTHL STHRYHHHHH ALPPPHSAAN SITFSPPKPV IVEEGPDDVL
     SFHNRRYDFT PLLHFLSNSD PNSDSDSAPP TSLDSTEFQL AESYRAVPAP LWHALLKSLC
     ASPSSINLAY GVVSWLQKHN LCFSYELLYS ILINALGRTE KLYEAFLLSQ RQTLTPLTYN
     ALIGACARNG DIDKALNLMS KMRRDGYQPD FVNYSSIIQY LTRSNRVDSP FLQKLYSEIE
     SDKIEMDGHL MNDIILGFSK AGDPTRALRF LAMAQSNGLN PKPSTLAAVI LALGNSGRTQ
     EAEALFEEIR ENGLEPRTRA YNALLKGYVK TGSLKDAEFV VSEMEKAGVM PDEQTYSLLV
     DAYAQAGRWE SARIVLKEME ASNVQPNSFV YSRILAGYRD KGQWQKSFQV LKDMKSCGVK
     PDRHFYNVMI DTFGKYNCLD HAMATFERML LEGIQPDTVT WNTLIDCHCK SGRHDKAEEL
     FQEMQRRGFS PCITTYNIMI NCMGEQQRWE QVSEFLSKMQ CQGLLPNSIT YTTLVDVYGK
     SGRFSDAIEC LEVLKSTGFK PTSAMYNALI NAYAQKGLSE LAVNSFRLMT TEGLTPSLLA
     LNSLINAFGE DRRDAEAFAV LQYMKENNIE PDVVTYTTLM KALIRCEKFQ KVPGVYEEMV
     TSGCAPDRKA RAMLRSALRY MKQTLKS
//
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