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Database: UniProt
Entry: A0A0M2LUI9_9SPHN
LinkDB: A0A0M2LUI9_9SPHN
Original site: A0A0M2LUI9_9SPHN 
ID   A0A0M2LUI9_9SPHN        Unreviewed;       497 AA.
AC   A0A0M2LUI9;
DT   11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT   11-NOV-2015, sequence version 1.
DT   24-JAN-2024, entry version 31.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
GN   ORFNames=XM50_09710 {ECO:0000313|EMBL:KKI19404.1};
OS   Sphingomonas sp. Ag1.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingomonas.
OX   NCBI_TaxID=1642949 {ECO:0000313|EMBL:KKI19404.1, ECO:0000313|Proteomes:UP000033997};
RN   [1] {ECO:0000313|EMBL:KKI19404.1, ECO:0000313|Proteomes:UP000033997}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Ag1 {ECO:0000313|EMBL:KKI19404.1,
RC   ECO:0000313|Proteomes:UP000033997};
RA   Pei D., Yu W., Kukutla P., Xu J.;
RT   "Draft Genome Sequences of Sphingomonas sp. Ag1 from Mosquito Anopheles
RT   gambiae.";
RL   Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are then
CC       released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798, ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KKI19404.1}.
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DR   EMBL; LAZX01000090; KKI19404.1; -; Genomic_DNA.
DR   RefSeq; WP_046409125.1; NZ_LAZX01000090.1.
DR   AlphaFoldDB; A0A0M2LUI9; -.
DR   STRING; 1642949.XM50_09710; -.
DR   PATRIC; fig|1642949.3.peg.2700; -.
DR   OrthoDB; 9814402at2; -.
DR   Proteomes; UP000033997; Unassembled WGS sequence.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   NCBIfam; TIGR02395; rpoN_sigma; 1.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN          133..317
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          333..490
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
FT   REGION          50..74
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        57..73
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   497 AA;  53693 MW;  4D8035CB4F74D3E8 CRC64;
     MSLAPRLDLR QSQSLVMTPQ LQQAIKLLTL SNLEIEGVIA EELEKNPLLE ALPAADDAPV
     PEREPEAPRD EPAPADELVL SGEAAGEALD VDIVAERFDD SPLDSMTGDR AAGDGLGLTG
     ATGGSLEDGP DLDALAAGDR SLAEHLLYQA GEVLGGGDLF VAQHLIDLID EAGYLTTELA
     DVASRLGVPL EAVERLLGVI HTFDPTGVGA RNLAECIALQ AREADRYDPA MARLIDNLDL
     VARGDLARLK RICEVDDEDM ADMIRELRGY DPKPGLRFGG EPMQAVTPDL HVRRTRGGWI
     VELDSATLPR VLVNRRYHAE LSSGPQDKAS KAWLGDMLAS ANWLVKALDQ RQKTIIRVAT
     EIVRQQEAFF LKGVAHLRPL TLRQVADAIE MHESTVSRVT SNKYLSCARG LFELKYFFTS
     AIQSADGGDA VSAEAVKSAI RGLVANEGAK ILSDDTIVEL LNAKGFDIAR RTVAKYREAM
     GIGSSVQRRR QRALSGG
//
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