ID   A0A0N1C169_9SPHN        Unreviewed;       285 AA.
AC   A0A0N1C169;
DT   09-DEC-2015, integrated into UniProtKB/TrEMBL.
DT   09-DEC-2015, sequence version 1.
DT   27-MAR-2024, entry version 24.
DE   RecName: Full=YkuD domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=IP81_13650 {ECO:0000313|EMBL:KPF91205.1};
OS   Novosphingobium sp. AAP83.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Novosphingobium.
OX   NCBI_TaxID=1523425 {ECO:0000313|EMBL:KPF91205.1, ECO:0000313|Proteomes:UP000037998};
RN   [1] {ECO:0000313|EMBL:KPF91205.1, ECO:0000313|Proteomes:UP000037998}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AAP83 {ECO:0000313|EMBL:KPF91205.1,
RC   ECO:0000313|Proteomes:UP000037998};
RA   Zeng Y., Feng F., Liu Y., Koblizek M.;
RT   "Novel Diversity of Limnic Aerobic Anoxygenic Phototrophic Bacteria as
RT   Revealed by High-throughput Strain Identification and Genome Sequencing.";
RL   Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
CC   -!- SIMILARITY: Belongs to the YkuD family.
CC       {ECO:0000256|ARBA:ARBA00005992}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KPF91205.1}.
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DR   EMBL; LJHY01000022; KPF91205.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0N1C169; -.
DR   STRING; 1523425.IP81_13650; -.
DR   PATRIC; fig|1523425.4.peg.2136; -.
DR   OrthoDB; 463216at2; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000037998; Unassembled WGS sequence.
DR   GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR   GO; GO:0042834; F:peptidoglycan binding; IEA:InterPro.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR007730; SPOR-like_dom.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR   PANTHER; PTHR30582:SF34; L,D-TRANSPEPTIDASE YCIB-RELATED; 1.
DR   Pfam; PF05036; SPOR; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000037998};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          51..159
FT                   /note="L,D-transpeptidase catalytic"
FT                   /evidence="ECO:0000259|Pfam:PF03734"
FT   DOMAIN          212..284
FT                   /note="SPOR"
FT                   /evidence="ECO:0000259|Pfam:PF05036"
SQ   SEQUENCE   285 AA;  29969 MW;  7F225AE627801C7C CRC64;
     MKRWLGIGGA VAGMAALINL ALFGAEQRAE AQALAVQSAP AVSDVLQSGV LIVVSKASQR
     MYVFKDGALW DSSPVSTGKR GHSTPAGVFP ILQKRVHHRS NLYSNAPMPY MQRLTWRGVA
     IHAGRLPGYP ASHGCIRLPY SFARALFALT NAASTTVVVT NEAVRTDDVA VTLALNAQRP
     RPVVPWVMPQ PGVALAAAPV AVPVSGPYAG SGQTIQLAAE ASVGEAEARW ASLVTAYPEL
     AGFRKAVIPA VVGQRQFYRL RASAPGAHAY CASLKRAGAD CFSVS
//