ID A0A0P0CL12_9FLAO Unreviewed; 486 AA.
AC A0A0P0CL12;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:ALJ05097.1};
GN ORFNames=APS56_08145 {ECO:0000313|EMBL:ALJ05097.1};
OS Pseudalgibacter alginicilyticus.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Pseudalgibacter.
OX NCBI_TaxID=1736674 {ECO:0000313|EMBL:ALJ05097.1, ECO:0000313|Proteomes:UP000057981};
RN [1] {ECO:0000313|EMBL:ALJ05097.1, ECO:0000313|Proteomes:UP000057981}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HZ-22 {ECO:0000313|Proteomes:UP000057981};
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; CP012898; ALJ05097.1; -; Genomic_DNA.
DR RefSeq; WP_054727042.1; NZ_CP012898.1.
DR AlphaFoldDB; A0A0P0CL12; -.
DR STRING; 1736674.APS56_08145; -.
DR KEGG; ahz:APS56_08145; -.
DR PATRIC; fig|1736674.3.peg.1665; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000057981; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000057981};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 113..304
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 327..484
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 57..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 58..82
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 486 AA; 55900 MW; AD689CA765483016 CRC64;
MLKQQLQFKL SQKLSPQQIQ LMKLIQLPTQ AFEQRLKQEL EENPALESGK EALENDYDAD
LDNSNDDFND SETIGNDDIN VDEYLSDDEI PDYRTQVNNY SSDDEEKTMP YAAGTSFTQY
LINQLNTYRL DDEAREIAEF LVGSVDESGY IRRSLSDIMD DLAFTQNVYT TEEKIQSVLH
LVHQLDPAGV GARNLQECLS IQLHRKEKNA DIALAANIID SAFDQFTKKH YKKLMQKFDI
SELQLKDAIS EIEHLNPKPG GSYSGNNRIV EHVVPDFAIK IVDGELELTL NGRNAPELHV
SREYNNMLKG YKDSKEKSNS QKDAVIFIKQ KLDAAKWFIE AIKQRQQTLF VTMSAIMHYQ
KDYFLTGDER KLKPMILKDI ADEINMDVST VSRVANSKYV DTPYGTKLIK EFFSESMKND
QGEDVSTREI KKILEIVIEE ENKRKPLTDE TLALILKDKG YPIARRTVAK YREQLDIPVA
RLRKKI
//
