ID A0A0P4YEW1_9CRUS Unreviewed; 997 AA.
AC A0A0P4YEW1;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE SubName: Full=Transcription initiation factor TFIID subunit {ECO:0000313|EMBL:JAI93845.1, ECO:0000313|EMBL:KZS17569.1};
GN ORFNames=APZ42_016450 {ECO:0000313|EMBL:KZS17569.1};
OS Daphnia magna.
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda;
OC Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
OX NCBI_TaxID=35525 {ECO:0000313|EMBL:JAI93845.1};
RN [1] {ECO:0000313|EMBL:JAI93845.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D., Podicheti R., Orsini L., Colbourne J., Pfrender M.;
RT "Daphnia magna gene sets from two clonal populations assembled and
RT annotated with EvidentialGene.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:JAI93845.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:KZS17569.1, ECO:0000313|Proteomes:UP000076858}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Xinb3 {ECO:0000313|EMBL:KZS17569.1,
RC ECO:0000313|Proteomes:UP000076858};
RC TISSUE=Complete organism {ECO:0000313|EMBL:KZS17569.1};
RA Gilbert D.G., Choi J.-H., Mockaitis K., Colbourne J., Pfrender M.;
RT "EvidentialGene: Evidence-directed Construction of Genes on Genomes.";
RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF4 family.
CC {ECO:0000256|ARBA:ARBA00006178}.
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DR EMBL; GDIP01229556; JAI93845.1; -; Transcribed_RNA.
DR EMBL; GDIP01070224; JAM33491.1; -; Transcribed_RNA.
DR EMBL; LRGB01000626; KZS17569.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0P4YEW1; -.
DR STRING; 35525.A0A0P4YEW1; -.
DR Proteomes; UP000076858; Unassembled WGS sequence.
DR GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0006366; P:transcription by RNA polymerase II; IEA:UniProt.
DR CDD; cd08045; TAF4; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR Gene3D; 1.20.120.1110; TAFH/NHR1 domain; 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR045144; TAF4.
DR InterPro; IPR007900; TAF4_C.
DR InterPro; IPR037249; TAFH/NHR1_dom_sf.
DR InterPro; IPR003894; TAFH_NHR1.
DR PANTHER; PTHR15138; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR PANTHER; PTHR15138:SF14; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR Pfam; PF05236; TAF4; 1.
DR Pfam; PF07531; TAFH; 1.
DR SMART; SM00549; TAFH; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
DR SUPFAM; SSF158553; TAFH domain-like; 1.
DR PROSITE; PS51119; TAFH; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Initiation factor {ECO:0000313|EMBL:JAI93845.1};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Protein biosynthesis {ECO:0000313|EMBL:JAI93845.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000076858};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 464..560
FT /note="TAFH"
FT /evidence="ECO:0000259|PROSITE:PS51119"
FT REGION 45..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 198..223
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 438..465
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 617..637
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 911..938
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 997 AA; 104927 MW; DE2C16F2234A3261 CRC64;
MASSFLDDLI SNPSADADAV SALVGSLESQ LSNANVGASN NTQGGGLVFT TSSTSVPPPL
QPANAPSTTT ATFAGNGNSL HATTTCAPAT SVSVGSALST SSSTVSSIHL PNTTTVHSIL
PNGNPSGLVN IQQFAGGGMG LPNGTLTTSS GTVTTTLSGL VIHQQQQKMV ASTATSQQGT
MIIPTKVNPT VASTAVIGQQ QQQQQQQQHQ QHQHQQHQQH QQTTVLGTNG TVTSLNQSQV
LRQGTQVVQQ QQQTTVINSA GAGILPAGVQ VVNMNAMRPQ NVQNIQNMAS LNNPAHRALA
PRVMLAPQQM VGARPGQMGI TLQALQGFQA AGAQGHLLVK TETGQYQLLR VGPGPVAGTT
VGSQVVTSNI PSLQNVTNVA QQQQQPQHQA VQQLTTASNT APAMNQNVGA TYRLQVPVST
TIQPVPATTA APVGGNVSVT TTSTPAPAAA PTSNPASNSG QMTPDTAKVK CKNFLSTLLR
LASEQPESVA TNVQMLIQGL VDAKVEPEEF TTKLQRELNS SPQPCLIPFL KKSLPYLRHS
LATRELHIDG IRPPALSTVS TPQPMVVQQQ PQQQSVVNRV NAGPTQIQTV RPMGGQVRVQ
APTMVGASSV VLSTPRLPRP AANKATPKAK QAQQAPKVTA TATTAAATVA STMMAVSAVK
TEPSTTDAPA PLSFTITLPP VGGVTSTTTA TTAGPTPSVM VASTSTVLTS STGTKPVTSA
PTMSVGQSGI KGPVVASTGP KDASKEKKAF TFGSSLAGLA DNDINDVAAM GGVNLAEESQ
RILGSTDMIG TQIRSCKDEN FLFTGPLQRR IQQIASRNGL GDPSPEVVSL ISHATQERLK
TILEKLAVTA EHRMEVVKTD ARYEVQQDVK GQLKFLEELD KLERRRHSEI QREMLLKAAK
SRSKAEDPEQ AKLKAKAKEM QRAEMEELRQ REANMTALQA IGIRKKPKLD LAGTTGSYNQ
VPLRPRVKRV NLRDLLFLLK EEKGTVRSPL LYKAYLK
//
