ID A0A0P4YM85_9CRUS Unreviewed; 325 AA.
AC A0A0P4YM85;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE SubName: Full=Transcription initiation factor IIA subunit {ECO:0000313|EMBL:JAI96606.1, ECO:0000313|EMBL:KZS18930.1};
GN ORFNames=APZ42_014754 {ECO:0000313|EMBL:KZS18930.1};
OS Daphnia magna.
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda;
OC Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
OX NCBI_TaxID=35525 {ECO:0000313|EMBL:JAI96606.1};
RN [1] {ECO:0000313|EMBL:JAI96606.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D., Podicheti R., Orsini L., Colbourne J., Pfrender M.;
RT "Daphnia magna gene sets from two clonal populations assembled and
RT annotated with EvidentialGene.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:JAL09528.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D.G.;
RT "EvidentialGene: Evidence-directed Construction of Complete mRNA
RT Transcriptomes without Genomes.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:JAI96606.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:KZS18930.1, ECO:0000313|Proteomes:UP000076858}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Xinb3 {ECO:0000313|EMBL:KZS18930.1,
RC ECO:0000313|Proteomes:UP000076858};
RC TISSUE=Complete organism {ECO:0000313|EMBL:KZS18930.1};
RA Gilbert D.G., Choi J.-H., Mockaitis K., Colbourne J., Pfrender M.;
RT "EvidentialGene: Evidence-directed Construction of Genes on Genomes.";
RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TFIIA subunit 1 family.
CC {ECO:0000256|ARBA:ARBA00010059}.
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DR EMBL; GDIP01226795; JAI96606.1; -; Transcribed_RNA.
DR EMBL; GDIP01207196; JAJ16206.1; -; Transcribed_RNA.
DR EMBL; GDIQ01142198; JAL09528.1; -; Transcribed_RNA.
DR EMBL; GDIQ01140347; JAL11379.1; -; Transcribed_RNA.
DR EMBL; GDIP01063764; JAM39951.1; -; Transcribed_RNA.
DR EMBL; GDIQ01050625; JAN44112.1; -; Transcribed_RNA.
DR EMBL; GDIQ01049225; JAN45512.1; -; Transcribed_RNA.
DR EMBL; LRGB01000494; KZS18930.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0P4YM85; -.
DR STRING; 35525.A0A0P4YM85; -.
DR EnsemblMetazoa; XM_032924171.2; XP_032780062.1; LOC116918451.
DR Proteomes; UP000076858; Unassembled WGS sequence.
DR GO; GO:0005672; C:transcription factor TFIIA complex; IEA:InterPro.
DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR CDD; cd07976; TFIIA_alpha_beta_like; 2.
DR Gene3D; 1.10.287.100; -; 1.
DR Gene3D; 2.30.18.10; Transcription factor IIA (TFIIA), beta-barrel domain; 1.
DR InterPro; IPR004855; TFIIA_asu/bsu.
DR InterPro; IPR009088; TFIIA_b-brl.
DR PANTHER; PTHR12694; TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1; 1.
DR PANTHER; PTHR12694:SF8; TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1; 1.
DR Pfam; PF03153; TFIIA; 2.
DR SMART; SM01371; TFIIA; 1.
DR SUPFAM; SSF47396; Transcription factor IIA (TFIIA), alpha-helical domain; 1.
DR SUPFAM; SSF50784; Transcription factor IIA (TFIIA), beta-barrel domain; 1.
PE 3: Inferred from homology;
KW Initiation factor {ECO:0000313|EMBL:JAI96606.1};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Protein biosynthesis {ECO:0000313|EMBL:JAI96606.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000076858};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT REGION 63..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 201..276
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 222..275
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 325 AA; 34410 MW; 27A1F7F02939E1B8 CRC64;
MAANQALVAK LYRGVIEDVI NGVREAFLDE GIDEAVLLEL KQNWENKLQS SKAIDPVTDP
AEASLQNKLQ QSQQTSSAAN ATNATSQPAA SSQAKQPATT PTPATTTAAG GATAAVAATA
TTPAVRMVPV QITVPPQPGV TGHTAAKSIT VHVPAHALQG GAAGAQLQTI LSSPAVTAAL
SLPVEMATTV LQQHINNALQ TTAGRSQSRA DNGGVTQLDG PGDSSDDEDD VDDDDDDDVE
EEDDHDDEEI DADNDENADE EPLNSEDDVT DDDPSVLFET DNVVVCQYDK ITRSRNRWKF
HLKDGIMNIN GRDYVFQKAN GDAEW
//
