ID A0A0P5LWS4_9CRUS Unreviewed; 257 AA.
AC A0A0P5LWS4;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE SubName: Full=EOG090X0GPG {ECO:0000313|EMBL:SVE79835.1};
DE SubName: Full=THUMP domain-containing protein {ECO:0000313|EMBL:JAK84635.1, ECO:0000313|EMBL:KZS17111.1};
GN Name=EOG090X0GPG {ECO:0000313|EMBL:SVE79835.1};
GN ORFNames=APZ42_016671 {ECO:0000313|EMBL:KZS17111.1};
OS Daphnia magna.
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda;
OC Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
OX NCBI_TaxID=35525 {ECO:0000313|EMBL:JAK84635.1};
RN [1] {ECO:0000313|EMBL:JAJ72945.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D., Podicheti R., Orsini L., Colbourne J., Pfrender M.;
RT "Daphnia magna gene sets from two clonal populations assembled and
RT annotated with EvidentialGene.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:JAK84635.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D.G.;
RT "EvidentialGene: Evidence-directed Construction of Complete mRNA
RT Transcriptomes without Genomes.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:JAJ72945.1}
RP NUCLEOTIDE SEQUENCE.
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:KZS17111.1, ECO:0000313|Proteomes:UP000076858}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Xinb3 {ECO:0000313|EMBL:KZS17111.1,
RC ECO:0000313|Proteomes:UP000076858};
RC TISSUE=Complete organism {ECO:0000313|EMBL:KZS17111.1};
RA Gilbert D.G., Choi J.-H., Mockaitis K., Colbourne J., Pfrender M.;
RT "EvidentialGene: Evidence-directed Construction of Genes on Genomes.";
RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:SVE79835.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=CA-CH-1 {ECO:0000313|EMBL:SVE79835.1}, CH-H-1
RC {ECO:0000313|EMBL:SVE80465.1}, FR-SA-1 {ECO:0000313|EMBL:SVE81043.1},
RC GB-EK1-32 {ECO:0000313|EMBL:SVE81665.1}, and RU-SAM-5
RC {ECO:0000313|EMBL:SVE82807.1};
RA Cornetti L.;
RL Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; GDIP01150457; JAJ72945.1; -; Transcribed_RNA.
DR EMBL; GDIQ01167090; JAK84635.1; -; Transcribed_RNA.
DR EMBL; LRGB01000642; KZS17111.1; -; Genomic_DNA.
DR EMBL; LR010216; SVE79835.1; -; mRNA.
DR EMBL; LR010846; SVE80465.1; -; mRNA.
DR EMBL; LR011424; SVE81043.1; -; mRNA.
DR EMBL; LR012046; SVE81665.1; -; mRNA.
DR EMBL; LR013188; SVE82807.1; -; mRNA.
DR AlphaFoldDB; A0A0P5LWS4; -.
DR STRING; 35525.A0A0P5LWS4; -.
DR Proteomes; UP000076858; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006400; P:tRNA modification; IEA:InterPro.
DR CDD; cd11717; THUMP_THUMPD1_like; 1.
DR Gene3D; 3.30.2300.10; THUMP superfamily; 1.
DR InterPro; IPR004114; THUMP_dom.
DR InterPro; IPR040183; THUMPD1-like.
DR PANTHER; PTHR13452; THUMP DOMAIN CONTAINING PROTEIN 1-RELATED; 1.
DR PANTHER; PTHR13452:SF10; THUMP DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF02926; THUMP; 1.
DR SMART; SM00981; THUMP; 1.
DR SUPFAM; SSF143437; THUMP domain-like; 1.
DR PROSITE; PS51165; THUMP; 1.
PE 2: Evidence at transcript level;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000076858};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00529}.
FT DOMAIN 136..239
FT /note="THUMP"
FT /evidence="ECO:0000259|PROSITE:PS51165"
FT REGION 23..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 72..99
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 257 AA; 29186 MW; 23C8591CDB68ADF4 CRC64;
MSEAGNKRKA KDKAYYIKSA KQARKSANEL GPGQKGFLCT SNRERDGVRE AYNILNEHAD
ILYGSQEPHK DVESSEVKKE EIEDELTKEM DELKKKQAAP VSERRFQSVM TNIKGCIFIR
STLEDPSEIV DAIISDIEKK KQQTTKFLLR MLPIQITCKS VKEDILKSAE TLVDKMANHK
SFSLLIKIRN HNLKRDDLIV PIAEIVARKF PEMKVDLDNP EISMVVEVLR ATCCLGVVTN
YSGRAKYNLL EIAQKAK
//
