ID A0A0P7ZB37_9BACT Unreviewed; 493 AA.
AC A0A0P7ZB37;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE SubName: Full=RNA polymerase sigma-54 factor RpoN {ECO:0000313|EMBL:KPQ00808.1};
GN Name=rpoN {ECO:0000313|EMBL:KPQ00808.1};
GN ORFNames=HLUCCA01_02700 {ECO:0000313|EMBL:KPQ00808.1};
OS Bacteroidetes bacterium HLUCCA01.
OC Bacteria; Bacteroidota.
OX NCBI_TaxID=1666909 {ECO:0000313|EMBL:KPQ00808.1, ECO:0000313|Proteomes:UP000050310};
RN [1] {ECO:0000313|EMBL:KPQ00808.1, ECO:0000313|Proteomes:UP000050310}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HLUCCA01 {ECO:0000313|EMBL:KPQ00808.1};
RA Nelson W.C., Romine M.F., Lindemann S.R.;
RT "Identification and resolution of microdiversity through metagenomic
RT sequencing of parallel consortia.";
RL Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KPQ00808.1}.
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DR EMBL; LIHN01000001; KPQ00808.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0P7ZB37; -.
DR STRING; 1666909.HLUCCA01_02700; -.
DR PATRIC; fig|1666909.3.peg.1183; -.
DR Proteomes; UP000050310; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 115..313
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 335..491
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 61..80
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 493 AA; 56851 MW; 0C38DBB579AC7894 CRC64;
MINTGQYLGQ RQSLQQRLSP QQIQYIKLLQ LPTLSIEMRV KEELEQNPLL EEFSDDIASI
QEERDRDDDQ SEVTESTDEH TDIDWDSFMA NSDYEGKMYN PANAEEWVEI PKPYHENLLE
DLERQVGLLD LTDKELLIAE QILGSVEEDG YLRRDLNAIV DSIIFNTGDF IELYEAEQVL
KKIQRLDPPG IAARNLQECL KIQLEQQPAS EPGRNHALRI ISEEWELFEK KHFDRVQKRL
NLSDDQLREA YECIQKLDPK PGGSTDTEEV QSYVVPDFTV TYQPDDSKGE DGGDFVIQLH
RKNRPALRIS KAYKAMWDEL QQKSAGSPGD RETKAFIKTK MEAARAFMEA IHQRSHTLMN
VMKTIVSLQE KFFRFGTTLR PMILKDIADR IGMDISTVSR VVNGKYVQTE FGVYELKYFF
NEGIETDDGE TASNRDVKNH IARLIGDEDK NKPLSDDAIA AMLNKMGYKV ARRTVSKYRE
QLGMPVARLR KTL
//
