ID A0A0Q1AJD4_9CORY Unreviewed; 1064 AA.
AC A0A0Q1AJD4;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE SubName: Full=Ribonuclease E {ECO:0000313|EMBL:KQB86941.1};
DE EC=3.1.26.12 {ECO:0000313|EMBL:KQB86941.1};
GN Name=rne {ECO:0000313|EMBL:KQB86941.1};
GN ORFNames=Clow_01152 {ECO:0000313|EMBL:KQB86941.1};
OS Corynebacterium lowii.
OC Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales;
OC Corynebacteriaceae; Corynebacterium.
OX NCBI_TaxID=1544413 {ECO:0000313|EMBL:KQB86941.1, ECO:0000313|Proteomes:UP000050488};
RN [1] {ECO:0000313|EMBL:KQB86941.1, ECO:0000313|Proteomes:UP000050488}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NML 130206 {ECO:0000313|EMBL:KQB86941.1,
RC ECO:0000313|Proteomes:UP000050488};
RA Bernard K., Pacheco A.L., Mcdougall C., Burtx T., Weibe D., Tyler S.,
RA Olson A.B., Cnockaert M., Eguchi H., Kuwahara T., Nakayama-Imaohji H.,
RA Boudewijins M., Van Hoecke F., Bernier A.-M., Vandamme P.;
RT "Corynebacteirum lowii and Corynebacterium oculi species nova, derived from
RT human clinical disease and and emended description of Corynebacterium
RT mastiditis.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KQB86941.1}.
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DR EMBL; LKEV01000002; KQB86941.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q1AJD4; -.
DR STRING; 1544413.Clow_01152; -.
DR PATRIC; fig|1544413.3.peg.1159; -.
DR OrthoDB; 9804278at2; -.
DR Proteomes; UP000050488; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0004540; F:RNA nuclease activity; IEA:InterPro.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd04453; S1_RNase_E; 1.
DR Gene3D; 1.10.10.2480; -; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR006847; IF2_N.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR019307; RNA-bd_AU-1/RNase_E/G.
DR InterPro; IPR004659; RNase_E/G.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR00757; RNaseEG; 1.
DR PANTHER; PTHR30001; RIBONUCLEASE; 1.
DR PANTHER; PTHR30001:SF0; RIBONUCLEASE G; 1.
DR Pfam; PF04760; IF2_N; 1.
DR Pfam; PF10150; RNase_E_G; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000313|EMBL:KQB86941.1};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000050488};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 475..558
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 83..416
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 858..902
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 934..1064
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 118..132
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 133..180
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..271
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 277..292
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 303..320
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 367..383
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 397..416
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 858..899
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 934..964
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1031..1053
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1064 AA; 118243 MW; BE20DD1EA5A9B86A CRC64;
MARSQKKSEK EANTPVAEAL AGQARDFDRS QLGAKTRVHA LAKMLGGTSK ELIVALDSLG
SVKVAQSTLS QEEATALLDY LAGAGKDKDA GEKPKKATKA RKSTKKAVKK AAKKNNEGDT
GEPQSGESEQ NAQAPEKAEE KQDSGESVER IRHRVEKNVA NEIHQIEEKV EKDLSEQVAQ
AQEKAEEGAE NAAPEVAEAT EAIEAAEVTE QETAEEEEKA EEKKSRGRRT RKITRSARST
RSAKRASEAK KLVEAVAPAE SVEKEAPEEE PTAQEVAEDN REETEGASEA KHPRRRTRRA
TRRTQPRAEQ NERAERTEQI EEPETEEPET EEEVPEAKKP RRRGRRGTRR GRGAAEEPTA
APQVESADSE EQEEPETAEE PQEQEIQEPV ALKGSTRLEA QRRRRSERSD EARRKRHVIS
QAEFLARRES VDRTMVVRER NRHDHHGVVT QVGVLEDELL VEHFVTSDQQ SSMIGNIYLG
RVQNVLPSME AAFIDIGKGR NGVLYAGEVD WKAAGLGGRS RKIEQALRAG DQVLVQVTKD
PVGHKGARLT TQISLAGRFL VYVPGGRSAG ISRKLPGPER KRLKDILKAV VPGEGGAIIR
TAAEGVSEEA IAADVRRLHD LWEDIQARAQ EEKDSRGATP VTLYEEPDML VKVVRDLFNE
DFGSLVVEGK RAWNTVHAYV QSVAPDLEER LVFYDRQEHG GTDVFEAYRV DEQLQKALAR
MVWLPSGGSL VIDRTEAMTV IDVNTGRFTG SGGNLEETVT RNNLEAAEEI VRQLRLRDLG
GMIVIDFIDM VLPENRDLVL RRLKEALGRD RTRHQVSEVT SLGLVQLTRK RLGTGLLETF
STECPTCEGR GIVLHEDPVE HGAGEKAEKY AQADRKRKES KEGAKEHKGE REKKPAKSPQ
RSIEQLAAAV VVDDTAAPAE QGLSEVEKIA VAAVDTADEL DPHEPNGAHY ERAVEEFEAS
PRRKRRTRGN SRSDRRPQPE DFVEEPAAET PESTETSDST ESSPASRRRH RRRVVRRNAG
SASAARKSKA QRTAPVRETT AREQKEEAGS SRRRGRRRVT RRRS
//
