ID A0A0Q3IP70_BRADI Unreviewed; 922 AA.
AC A0A0Q3IP70;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE RecName: Full=Helicase ATP-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=BRADI_3g59790v3 {ECO:0000313|EMBL:KQK02004.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQK02004.1};
RN [1] {ECO:0000313|EMBL:KQK02004.1, ECO:0000313|EnsemblPlants:KQK02004}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK02004.1,
RC ECO:0000313|EnsemblPlants:KQK02004};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQK02004.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK02004.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK02004}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQK02004};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; CM000882; KQK02004.1; -; Genomic_DNA.
DR EMBL; CM000882; PNT69667.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q3IP70; -.
DR STRING; 15368.A0A0Q3IP70; -.
DR EnsemblPlants; KQK02004; KQK02004; BRADI_3g59790v3.
DR EnsemblPlants; PNT69667; PNT69667; BRADI_3g59790v3.
DR Gramene; KQK02004; KQK02004; BRADI_3g59790v3.
DR Gramene; PNT69667; PNT69667; BRADI_3g59790v3.
DR InParanoid; A0A0Q3IP70; -.
DR Proteomes; UP000008810; Chromosome 3.
DR ExpressionAtlas; A0A0Q3IP70; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0010494; C:cytoplasmic stress granule; IEA:EnsemblPlants.
DR GO; GO:0055087; C:Ski complex; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:1901259; P:chloroplast rRNA processing; IEA:EnsemblPlants.
DR GO; GO:0016554; P:cytidine to uridine editing; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0000373; P:Group II intron splicing; IEA:EnsemblPlants.
DR GO; GO:0006397; P:mRNA processing; IEA:EnsemblPlants.
DR GO; GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IBA:GO_Central.
DR GO; GO:0010497; P:plasmodesmata-mediated intercellular transport; IEA:EnsemblPlants.
DR GO; GO:0016441; P:post-transcriptional gene silencing; IEA:EnsemblPlants.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF8; HELICASE SKI2W; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810}.
FT DOMAIN 1..84
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 193..377
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT COILED 421..483
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 693..720
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 922 AA; 105198 MW; EF529EB71E076E87 CRC64;
MTTEILRNML YQSVGMTASQ GRLFEVDVIV LDEVHYLSDI SRGTVWEETV IYCPKEVQLI
CLSATVANPD ELAGWIGQIH GKTELVTSNR RPVPLTWHFS KKFALLPLLD GKGKKMNRKL
RMSHSQNISS PKSEFYYVKG KRKLRTNKNE QQGNRSPLDI SKQVQLSKHE VTNMRRSQVP
LIRDTLSQLW ENDMLPAIWF IFSRRGCDAA VEYLEDCRLL HDCEASEVEL ELRRFRMQYP
DAIRENAVKG LMRGVAAHHA GCLPLWKSFI EELFQRGLVK VVFATETLAA GINMPARTAV
ISSLSKRIDA GRQLLTPNNL FQMAGRAGRR GIDTVGHSVL VQTPNEGPEE CCDVIFAGLE
PLVSQFTASY GMVLNLLAGS KVTHNQKESG DVKAKRSGRT LEEARKLVEQ SFGNYVGSNV
MVAAKEELER TQKEIQYLSS EITDEFIDRR CREELSEEDY AEISLLQKKF KEEKQIRNEL
KKRMELERMA AWKTRLEEFE SGHLPFMCLQ YKDKDSVHHT IPAVFIGSLS SFDDQKIESM
LEDDSISPGK QEVDSGGELY YPSYYVALSS DNSWYLFTEK WIKTVYRTGL PALPSVEGGT
LPRETLKQLL LREDMMWDQV AKSEYGSLSC MDGSLDTWSW SLNVPVLNSL SEDNEVERFS
QEHQTAVECH KQQRRKVSQL KKTIRSTKGF REFQKIIDRR NFTKEKIERL EARSRRLTRR
IMQIEPTGWK EFLQISKVIQ EARVLDINTQ VIYPLGETAA AIRGENELWL AMVLRNKVLL
DLKPSQLAAV CGSLVSEGIK LRPWKNSSYV YEPSSVVTGV INYLDEQRNS LIELQEKHGV
KIPCEIDTQF AGMVEAWASG LTWREIMMDS AMDDGDLARL LRRTMDLLAQ IPKLPDIDPV
LQKNAQIACN VMDRVPLSEL AG
//
