ID A0A0Q3JM94_BRADI Unreviewed; 962 AA.
AC A0A0Q3JM94;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE RecName: Full=Phytochrome {ECO:0008006|Google:ProtNLM};
GN Name=100834357 {ECO:0000313|EnsemblPlants:KQK13172};
GN ORFNames=BRADI_1g08400v3 {ECO:0000313|EMBL:KQK13172.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQK13172.1};
RN [1] {ECO:0000313|EMBL:KQK13172.1, ECO:0000313|EnsemblPlants:KQK13172}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK13172.1,
RC ECO:0000313|EnsemblPlants:KQK13172};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQK13172.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK13172.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK13172}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQK13172};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region. Photoconversion of Pr to Pfr
CC induces an array of morphogenic responses, whereas reconversion of Pfr
CC to Pr cancels the induction of those responses. Pfr controls the
CC expression of a number of nuclear genes including those encoding the
CC small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B
CC binding protein, protochlorophyllide reductase, rRNA, etc. It also
CC controls the expression of its own gene(s) in a negative feedback
CC fashion. {ECO:0000256|ARBA:ARBA00002479}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; CM000880; KQK13172.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q3JM94; -.
DR EnsemblPlants; KQK13172; KQK13172; BRADI_1g08400v3.
DR Gramene; KQK13172; KQK13172; BRADI_1g08400v3.
DR Proteomes; UP000008810; Chromosome 1.
DR ExpressionAtlas; A0A0Q3JM94; baseline.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 218..391
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 621..691
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 763..806
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT REGION 1..28
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 962 AA; 106180 MW; 74DEAE5E89E4CCD3 CRC64;
MSSSRSNNRA TCSRGSSARS KHSERVVAQT PVDARLHAEF EGSQRRFDYS SSVSAANRSG
ASTSTAVSAY LQNMQRGRYI QPFGCLLAAH PETFALLAYS ENAAEMLDLT PHAVPTIDQR
DALTVGVDVR TLFRSQSAVA LHKAAVFGEV NLLNPILVHA RTSGKPFYAI LHRIDVGLVI
DLEPVNPADV PVTAAGALKS YKLAAKAISR LQSLPSGNLS LLCDVLVREV SELTGYDRVM
AYKFHEDEHG EVIAECRRSD LEPYLGLHYP ATDIPQASRF LFMKNKVRMI CDCAAVPVKL
IQDDNLSQPI SLCGSTMRAP HGCHAQYMAN MGSVASLVMS ITINEDEEED GDTGSDQQPK
GRKLWGLVVC HHSSPRFVPF PLRYACEFLL QVFGIQLNKE VELASQAKER HILRTQTLLC
DMLLRDAPIG IFTQSPNVMD LVKCDGAALC YRNQIMVLGS TPSEGEIKNI VAWLQEYHDG
STGLSTDSLV EAGYPGASAL GEIVCGMAAI KISSKGFILW FRSHTAKEIK WGGAKHEPGD
ADDNGRKMHP RSSFRAFLEV VKWRSVPWED VEMDAIHSLQ LILRGSLQDE DANNNNNVMS
IVEAPSDDMK KIQGLLELRI VTNEMVRLIE TATAPILAVD IVGNINGWNN KAAEITGLPT
TEAIGMPLVQ VVHGDSVEVV TQILNSALQG VEEQNLEIKL KTFHHLESNG PVILMVNACC
SRDLSEKVVG VCFVAQDLTG QKMILDKYTR IQGDYVAIVK NPNELIPPIF MINDLGSCLE
WNEAMQRITG IKREDAIDKL LIGEVFTLHD YGCRVKDHAT LTKLSILMNT VISGQDPEKL
PFGFFDADGK CMESLLTANK RTDAEGKITG ALCFLHVASP ELQHALQVQK MSEQAATHSF
KELTYIRQEL KNPLNGMQFT RNLLEPSELT EEQRQLLASN VLCQEQLKKI LHDNDLEGIE
QW
//
